View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13226_low_3 (Length: 671)
Name: NF13226_low_3
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_low_3 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 17 - 663
Target Start/End: Original strand, 8528615 - 8529277
Alignment:
| Q |
17 |
cttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528615 |
cttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaat |
8528714 |
T |
|
| Q |
117 |
caattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttaccttgagtggatattcagaacctcaatattgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528715 |
caattactatgacttgtaaggaagcatcaaccatcagattcaattgccaataaaaataaaattttaccttgagtggatattcagaacctcaatattgact |
8528814 |
T |
|
| Q |
201 |
cctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528815 |
cctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccat |
8528914 |
T |
|
| Q |
301 |
atttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528915 |
atttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacc |
8529014 |
T |
|
| Q |
401 |
ccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529015 |
ccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaaca |
8529114 |
T |
|
| Q |
501 |
ttagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529115 |
ttagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtg |
8529214 |
T |
|
| Q |
601 |
gaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
663 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529215 |
gaggagaaggaaacgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
8529277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 164 - 662
Target Start/End: Original strand, 8535333 - 8535840
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8535333 |
ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt |
8535432 |
T |
|
| Q |
264 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
363 |
Q |
| |
|
| |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8535433 |
gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt |
8535532 |
T |
|
| Q |
364 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatga |
460 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
8535533 |
cttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatga |
8535632 |
T |
|
| Q |
461 |
ttctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaata |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8535633 |
ttctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaagaaatccctttaattctcccatgctaata |
8535732 |
T |
|
| Q |
561 |
ggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattg |
654 |
Q |
| |
|
| ||| || || || ||||||||||||||||| |||||||||||||||||||||| || | ||||| ||||||||||||||| |||||||| |
|
|
| T |
8535733 |
tgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatgacttcagcgtctcactttcaaagcagaaaatcaatattg |
8535832 |
T |
|
| Q |
655 |
acctttgc |
662 |
Q |
| |
|
|||||||| |
|
|
| T |
8535833 |
acctttgc |
8535840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 50 - 663
Target Start/End: Complemental strand, 9075109 - 9074492
Alignment:
| Q |
50 |
ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaacc |
148 |
Q |
| |
|
|||||||||||||| ||||||| |||||| || | |||||||||||| |||| || ||||||| ||| ||||||||||||||||| |||| || || |
|
|
| T |
9075109 |
ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaaa-ataaagt |
9075011 |
T |
|
| Q |
149 |
atcagatttaaaatt-ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggat |
247 |
Q |
| |
|
|| ||| | ||| ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9075010 |
attagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggat |
9074911 |
T |
|
| Q |
248 |
tacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgac |
347 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| || |
|
|
| T |
9074910 |
tacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataac |
9074811 |
T |
|
| Q |
348 |
aatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatcgatgttgt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||| || || | || || ||||||||||||||||||| ||||||| |
|
|
| T |
9074810 |
aatatggcagcaccttcttcaaagtgttttatcggcca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgt |
9074714 |
T |
|
| Q |
445 |
aaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaa |
544 |
Q |
| |
|
||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
9074713 |
aaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatccctttaa |
9074614 |
T |
|
| Q |
545 |
ttctcccatgcta-ataggcctacaacaa--aaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcag |
641 |
Q |
| |
|
|||||||||| || | | |||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
9074613 |
ttctcccatgatatgtctgttatcaacaattccactattatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaacag |
9074514 |
T |
|
| Q |
642 |
aaaaccaatattgacctttgct |
663 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
9074513 |
aaaaacaatattgacctttgct |
9074492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 164 - 663
Target Start/End: Complemental strand, 1600554 - 1600066
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
263 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| | |
|
|
| T |
1600554 |
ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct |
1600455 |
T |
|
| Q |
264 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
363 |
Q |
| |
|
||||||||||||||| |||| ||||| | | |||||| ||||||| || ||| | |||||||| | ||| |||| |||||||||||||||||| |
|
|
| T |
1600454 |
gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt |
1600358 |
T |
|
| Q |
364 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
463 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||| || || | ||||||||||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1600357 |
cttcaaagtgttgtatcggcca---taaacccgaacaccatgaa---------aaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattc |
1600270 |
T |
|
| Q |
464 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggc |
563 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| ||||| ||||| |||||| | ||||||||||| |||||||||||||||||||||||||||| | | |
|
|
| T |
1600269 |
ttcaatgccatattccttcataacccacattggaacatcagataaaaaggtag--tcacaaatgtaaagaaatccctttaattctcccatgctaacatgg |
1600172 |
T |
|
| Q |
564 |
c---tacaacaa---aaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacc |
657 |
Q |
| |
|
| ||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
1600171 |
ctgttaccacaagttccattattatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgaca |
1600072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 166 - 501
Target Start/End: Original strand, 8636701 - 8637039
Alignment:
| Q |
166 |
accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat |
265 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| | | | |
|
|
| T |
8636701 |
accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga |
8636800 |
T |
|
| Q |
266 |
ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct |
365 |
Q |
| |
|
| | || ||||||| |||||||||||| ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || ||| |
|
|
| T |
8636801 |
agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct |
8636900 |
T |
|
| Q |
366 |
tcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgatt |
462 |
Q |
| |
|
||||||||||||| |||||| | || |||||||| | | | | || | |||||||| ||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
8636901 |
tcaaagtgttttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgatt |
8637000 |
T |
|
| Q |
463 |
ctccaatgccatattcattcataacccacattgaaacat |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8637001 |
ctccaatgccatattcattcataacccacattgcaacat |
8637039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 164 - 660
Target Start/End: Original strand, 8644044 - 8644546
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
263 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| | |||| |
|
|
| T |
8644044 |
ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc |
8644142 |
T |
|
| Q |
264 |
atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct |
362 |
Q |
| |
|
|| | || |||||||||||||||||||| ||| ||| | ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
8644143 |
ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc |
8644242 |
T |
|
| Q |
363 |
tcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatg |
459 |
Q |
| |
|
|||||||||| ||||| |||||| | ||||||||||| | | | | || | |||||||| ||| | ||||||| |||||||||| ||||||||||| |
|
|
| T |
8644243 |
tcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatg |
8644342 |
T |
|
| Q |
460 |
attctccaatgccatattcattcataacccacattgaaacatta-gatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaa |
558 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| | || | || | | ||| |||||||| || |||||| ||||||||||||||| || |
|
|
| T |
8644343 |
attctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaatat-gtatcgcaaatgtaaagtaatccccttaattctcccatgcgaa |
8644441 |
T |
|
| Q |
559 |
taggc---ctacaacaaaaaacatta---tgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatat |
652 |
Q |
| |
|
|| || ||| || ||| ||||| |||||| |||||| |||||||||||||||||| |||||||||||| ||||||| |||||| |||||| |
|
|
| T |
8644442 |
tacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatat |
8644538 |
T |
|
| Q |
653 |
tgaccttt |
660 |
Q |
| |
|
||||||| |
|
|
| T |
8644539 |
agaccttt |
8644546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 164 - 501
Target Start/End: Original strand, 8677637 - 8677986
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
263 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| | |||| |
|
|
| T |
8677637 |
ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc |
8677735 |
T |
|
| Q |
264 |
atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct |
362 |
Q |
| |
|
|| | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8677736 |
ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc |
8677835 |
T |
|
| Q |
363 |
tcttcaaagtgttttatcggccagcttaaaccataaccccgtggaaca---cgatccaaaggattga----acg-----aagtatcgatgttgtaaatct |
450 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| ||| | | || | |||||||| ||| ||| | |||| |||||||||| || |
|
|
| T |
8677836 |
tcttcaaagtgttttaccggccaacataaaccataatgccgcgaatcaggtctgcccaaaggactgacaggacggaccacaatatcaatgttgtaaacct |
8677935 |
T |
|
| Q |
451 |
tagtccatgattctccaatgccatattcattcataacccacattgaaacat |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
8677936 |
tagtccatgattctccaatgccatattcattcatatcccacattgcaacat |
8677986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 164 - 560
Target Start/End: Complemental strand, 8548365 - 8547984
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
263 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||| | ||||||||||| | | | |
|
|
| T |
8548365 |
ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt |
8548266 |
T |
|
| Q |
264 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
363 |
Q |
| |
|
| ||||||||||||||| |||||| |||||||| || || | ||||| |||||||||| | ||||||||| |||||| ||||||||| | |
|
|
| T |
8548265 |
gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct |
8548166 |
T |
|
| Q |
364 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
463 |
Q |
| |
|
||||||||||||||| |||| | | ||| ||| || ||| ||| |||||||| | ||||||| |||| |||||||||||||||||| || |
|
|
| T |
8548165 |
cttcaaagtgttttaccggcaaacacaaagcatgacgccgcgga---------gaaggattggtcaaagtatcaatgtggtaaatcttagtccatgactc |
8548075 |
T |
|
| Q |
464 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaata |
560 |
Q |
| |
|
| |||||||| |||||||||||||||| ||||| ||| | | || || ||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
8548074 |
t------ccatattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatccctttaattctcccaagctaata |
8547984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 433 - 663
Target Start/End: Original strand, 8641475 - 8641720
Alignment:
| Q |
433 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg------gatcacaaat |
526 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||| |||||||||| |
|
|
| T |
8641475 |
tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaat |
8641574 |
T |
|
| Q |
527 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaac---------attatgatttccaaacacatgtggaggagaaggaaatgac |
617 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||| || | || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8641575 |
gtaaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaaataac |
8641674 |
T |
|
| Q |
618 |
tgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
663 |
Q |
| |
|
| ||| |||||| |||| || |||||| |||||||||||||||| |
|
|
| T |
8641675 |
ttcaatctctcactttccaaacagaaacataatattgacctttgct |
8641720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 428 - 637
Target Start/End: Complemental strand, 2856897 - 2856682
Alignment:
| Q |
428 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
527 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2856897 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2856798 |
T |
|
| Q |
528 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
621 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2856797 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2856698 |
T |
|
| Q |
622 |
acctctcattttcaaa |
637 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2856697 |
acctctcactttcaaa |
2856682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 428 - 637
Target Start/End: Complemental strand, 2874507 - 2874292
Alignment:
| Q |
428 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
527 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2874507 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2874408 |
T |
|
| Q |
528 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
621 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2874407 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2874308 |
T |
|
| Q |
622 |
acctctcattttcaaa |
637 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2874307 |
acctctcactttcaaa |
2874292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 8535183 - 8535294
Alignment:
| Q |
47 |
agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc |
144 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
8535183 |
agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc |
8535282 |
T |
|
| Q |
145 |
aaccatcagatt |
156 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8535283 |
aaccatcagatt |
8535294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 637
Target Start/End: Complemental strand, 2845070 - 2844855
Alignment:
| Q |
428 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
527 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2845070 |
cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcaagagacgatatatgacaaatg |
2844971 |
T |
|
| Q |
528 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
621 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2844970 |
taaagaaatcccttcaattctcccaatctaataggcatgctaaggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2844871 |
T |
|
| Q |
622 |
acctctcattttcaaa |
637 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2844870 |
acctctcactttcaaa |
2844855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
| Q |
430 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
495 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905003 |
aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
2904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 661
Target Start/End: Complemental strand, 2904848 - 2904774
Alignment:
| Q |
587 |
tccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttg |
661 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||| ||||||| | |||| |||||||||| |||| |
|
|
| T |
2904848 |
tccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttg |
2904774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 660
Target Start/End: Original strand, 8637140 - 8637201
Alignment:
| Q |
599 |
tggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgaccttt |
660 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||| |||||| ||||||| |
|
|
| T |
8637140 |
tggaggagaaggaaatgattgcaacctctcattttctaaacagaaacacaatatagaccttt |
8637201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
| Q |
200 |
tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa |
255 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
8641242 |
tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa |
8641297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 8548542 - 8548409
Alignment:
| Q |
23 |
tccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaatt |
121 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| |||||| |||||| | ||| | ||||| | |||||||||||||| || ||||||| ||| |||| |
|
|
| T |
8548542 |
tccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactcatcttatgattaaaattaatt |
8548444 |
T |
|
| Q |
122 |
actatgacttgtaaggaagcatcaaccatcagatt |
156 |
Q |
| |
|
||||||| || || || |||||||||||||||||| |
|
|
| T |
8548443 |
actatgatttttatgggagcatcaaccatcagatt |
8548409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 402
Target Start/End: Original strand, 8641357 - 8641435
Alignment:
| Q |
324 |
aaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacccc |
402 |
Q |
| |
|
||||||||| ||||||||||| || ||| |||||||| |||||||||||| ||| |||||| | || ||||||||||| |
|
|
| T |
8641357 |
aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataacccc |
8641435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
| Q |
271 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2857018 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2856974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
| Q |
271 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2874628 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2874584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
| Q |
167 |
ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa |
255 |
Q |
| |
|
|||||||| || ||||| ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
9003305 |
ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa |
9003393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 1600670 - 1600601
Alignment:
| Q |
83 |
aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca |
152 |
Q |
| |
|
||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | |||| ||||||| |
|
|
| T |
1600670 |
aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca |
1600601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
| Q |
271 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
2845191 |
tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt |
2845147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 17 - 663
Target Start/End: Original strand, 9442776 - 9443438
Alignment:
| Q |
17 |
cttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaagtccctttgaatactcgactcatgattacaat |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9442776 |
cttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgtaacataggaaacttacacaagtccctttgaatactcatctcatgattacaat |
9442875 |
T |
|
| Q |
117 |
caattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaattttaccttgagtggatattcagaacctcaatattgact |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442876 |
caattactatgacttgtaaagaagcatcaaccatcagattcaattgccaataaaaataaaattttaccttgagtggatattcagaacctcaatattgact |
9442975 |
T |
|
| Q |
201 |
cctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442976 |
cctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataatttttccgactcccatgaattcgaaaaactttgaacccat |
9443075 |
T |
|
| Q |
301 |
atttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443076 |
atttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacc |
9443175 |
T |
|
| Q |
401 |
ccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443176 |
ccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaaca |
9443275 |
T |
|
| Q |
501 |
ttagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
9443276 |
ttagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctactacaataaacattatgatttccaaacacatgtg |
9443375 |
T |
|
| Q |
601 |
gaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgct |
663 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9443376 |
gaggagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgct |
9443438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 164 - 663
Target Start/End: Complemental strand, 48362128 - 48361618
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat |
258 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
48362128 |
ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag |
48362029 |
T |
|
| Q |
259 |
aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc |
358 |
Q |
| |
|
|| | |||||||| ||||| ||||| ||||| | | |||||| |||||||| || ||| | |||| | | ||||||||||| ||||||||||||| |
|
|
| T |
48362028 |
aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc |
48361929 |
T |
|
| Q |
359 |
accttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatc---caaaggattgaacgaagtatcgatgttgtaaatcttagtc |
455 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | || || | | || | | |||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
48361928 |
accttcttcaaagtgttttatcggcca---taaagctgaatgccaagaagcaaaactgctcgaaggattgaacgcagtattgatgttgtaaaccttagtc |
48361832 |
T |
|
| Q |
456 |
catgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgc |
555 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48361831 |
tatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatccctttaattctcccatgc |
48361732 |
T |
|
| Q |
556 |
taataggcctacaacaaaaaa------cattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaa |
649 |
Q |
| |
|
||||| |||| || || || |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |
|
|
| T |
48361731 |
taatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatgactgcaccctctcactttcaaaacagaaaaacaa |
48361632 |
T |
|
| Q |
650 |
tattgacctttgct |
663 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48361631 |
tattgacctttgct |
48361618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 189 - 629
Target Start/End: Original strand, 35779694 - 35780119
Alignment:
| Q |
189 |
tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa |
288 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | ||| ||| ||||| |||||||||||| |
|
|
| T |
35779694 |
tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa |
35779793 |
T |
|
| Q |
289 |
ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagct |
388 |
Q |
| |
|
||||| | |||||||| |||||||| ||||| ||||||||||| | ||||||||| ||||||||||| |||||| |||||| |||||| | |
|
|
| T |
35779794 |
ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttttaccggccaaca |
35779884 |
T |
|
| Q |
389 |
taaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcata |
485 |
Q |
| |
|
||||||||||| | ||| || | ||| | | || ||||| |||||| || |||||||||| ||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
35779885 |
taaaccataacgcggtgaaataggatagcctagagaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcata |
35779984 |
T |
|
| Q |
486 |
acccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgat |
585 |
Q |
| |
|
|||||||||| ||||| | | ||| || ||||||||||| |||||||||||||||||||||||||||||| |||| | || |||| |
|
|
| T |
35779985 |
acccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaaatccctttaattctcccatgctaatacgcct---------attatcatgaa |
35780075 |
T |
|
| Q |
586 |
ttccaaacacatgtggaggagaaggaaatgactgcaacctctca |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35780076 |
ttccaaacacatgtggaggagaaggaaatggctgcaacctctca |
35780119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 385
Target Start/End: Original strand, 5130638 - 5130860
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
263 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| |||||||||| | ||| |
|
|
| T |
5130638 |
ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt |
5130737 |
T |
|
| Q |
264 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct |
362 |
Q |
| |
|
| | ||||||||||||||||||||||| | | |||||| || ||||| | || || |||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
5130738 |
gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc |
5130837 |
T |
|
| Q |
363 |
tcttcaaagtgttttatcggcca |
385 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
5130838 |
tcttcaaagtgttttaccggcca |
5130860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 418 - 507
Target Start/End: Complemental strand, 26324287 - 26324198
Alignment:
| Q |
418 |
aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagata |
507 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26324287 |
aaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagata |
26324198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 518 - 637
Target Start/End: Original strand, 5130959 - 5131081
Alignment:
| Q |
518 |
atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat |
614 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||| || | | | ||||| ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
5130959 |
atcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaat |
5131058 |
T |
|
| Q |
615 |
gactgcaacctctcattttcaaa |
637 |
Q |
| |
|
|| ||||| |||||| ||||||| |
|
|
| T |
5131059 |
gattgcaatctctcactttcaaa |
5131081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 164 - 560
Target Start/End: Original strand, 16716179 - 16716577
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataa--t |
261 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||| | | |
|
|
| T |
16716179 |
ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaaaatcct |
16716278 |
T |
|
| Q |
262 |
ttat---------ccgact-cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaata |
351 |
Q |
| |
|
||| | || | |||||||||||||||| |||| |||||||| | ||| || ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
16716279 |
ttaaaataccttgcagaatacccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaata |
16716378 |
T |
|
| Q |
352 |
tggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatctt |
451 |
Q |
| |
|
| ||||||| |||||||||||||||| ||| | | ||| ||| ||||| ||||| ||||| ||| || ||||||| |||| ||||| ||| |
|
|
| T |
16716379 |
cgccagcaccctcttcaaagtgttttaccggaaaacacaaaacatcacccc-------acgat--aaaggtttgtac-aagtatcaatgtggtaaacctt |
16716468 |
T |
|
| Q |
452 |
agtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctccc |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
16716469 |
agtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgtatagaaatccctttaattctccc |
16716568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 560
Target Start/End: Original strand, 4735 - 4878
Alignment:
| Q |
417 |
aaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg |
516 |
Q |
| |
|
||||||||| || |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || | | |
|
|
| T |
4735 |
aaaggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttg |
4834 |
T |
|
| Q |
517 |
gatcacaaatgtatagaaatccctttaattctcccatgctaata |
560 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4835 |
agtcacaaatgtaaagaaatccctttaattctcccatgctaata |
4878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 4492 - 4587
Alignment:
| Q |
164 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata |
259 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
4492 |
ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata |
4587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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