View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13226_low_4 (Length: 535)
Name: NF13226_low_4
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Complemental strand, 37619883 - 37619374
Alignment:
| Q |
9 |
gataattctctataaggtttgaagactttgtaacgagagttgcttaatgcatttcaaaaatcacatacaactctaaatgatcgtatatttttggtattta |
108 |
Q |
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| T |
37619883 |
gatacttctctataaggtttgaagactttgtaacgagagttgcttaatgcatttcaaaaatcacataaaactctaaatgatcgtctatttttggtatttg |
37619784 |
T |
|
| Q |
109 |
attacgtagatcatttannnnnnngtcaaatttaatttaacacgctttactcttagtttgatttacatgattttcatttatatttatgtacttataagtt |
208 |
Q |
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| T |
37619783 |
attacgtaggtcatttatttttttgtcaaatttaatttaacacggtttactcttagtttgatttacatgattttcatttatatttatgtacttataagtt |
37619684 |
T |
|
| Q |
209 |
tctgcaattaattttcaaagtcttttacatttgtgcacttttaacaacatagcaatttactttttaaactcatttacatttcttgcacttcaagtttatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37619683 |
tctgcaattaattttcaaagtcttttacatttgtgcacttttaacaacatagcaatttactttttaaactcatttatatttcttgcacttcaagtttatg |
37619584 |
T |
|
| Q |
309 |
ccagttgaccttcatttattttactttatgcaccgtacattttcaatgtattttttacattctttgcactttaaatttcaagatagttcattcgcaggca |
408 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37619583 |
ccagttgaccttcatttattttactttatgcactgtacattttcaatgtattttttagattctttgcactttaaatttcaagatagttcattcgcaggca |
37619484 |
T |
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| Q |
409 |
cgttttatgctcaaatcattcacttttctgcatcaaaatagttcatcattcgtattctcaatattaaacattctaatcatttataattggtgatagattc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37619483 |
cgttttatgctcaaatcattcacttttctgcatcaaaatagttcattattcgtattctcaatattaaacattctaatcatttataattggtgatagattc |
37619384 |
T |
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| Q |
509 |
ctattccaac |
518 |
Q |
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|||||||||| |
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| T |
37619383 |
ctattccaac |
37619374 |
T |
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