View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13226_low_5 (Length: 492)
Name: NF13226_low_5
Description: NF13226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13226_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 56326266 - 56326735
Alignment:
| Q |
8 |
tacaattccctgcatcctatccccactttattcttatgtgcacattagttattttaggggttttccagtcttgttggtttctcacctatatcttaaagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
56326266 |
tacaattccctgcatcctatccccactttattcttatgtgcacattagttattttaggggttttccagtcttgttggtttatcacctatatattaaagca |
56326365 |
T |
|
| Q |
108 |
gaccctatttaatatgacaagaattaaattaagttcaatcaaaatactaatttggatgcttgcaaacatgaatcagcatgcttgacaattaaatatgcaa |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
56326366 |
gaccctatttaatatgacaacaattaaattaagttcaatcaaaatactaatttggatgcttacaaacatgaatcagcatggttgacaattaaatatgcaa |
56326465 |
T |
|
| Q |
208 |
tttatgtgttaagaatagagatttgaaaccaaggaaaatcagaattgtagcaaattgatgtggagctgatcatgctaggcaaattgtgcaatacttcccc |
307 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56326466 |
ttgatgtgttacgaatagagatttgaaaccaaggaaaatcagaattgtagcaaattgatttggagctgatcatgctaggcaaattgtgcaatacttcccc |
56326565 |
T |
|
| Q |
308 |
tgatgatgtatataacggggcattatgaatttacagacaagactagtgaaattgcatatcgccaaggctacatgcagcaaagaagctcgcggtacttgaa |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56326566 |
taatgatgtatataacggggcattatgaatttacagacaagactagtgaaattgcatatcgccaaggctacatgcagcaaagaagctcgcggtacttgaa |
56326665 |
T |
|
| Q |
408 |
tgcgcacataaatcggaaaagaaatgtgtggcaataatatctaatttgaaggtcggagaaacaaataact |
477 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56326666 |
tgcgcacataaattggaaaagaaatgtgtggcaataatatctaatttgaaggtcagagaaacaaataact |
56326735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University