View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13227_high_2 (Length: 568)
Name: NF13227_high_2
Description: NF13227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13227_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 41936605 - 41936064
Alignment:
| Q |
1 |
ttttatacatataaagagataaaatgtacagcatgagaaagcattgttaggagggtacgagacattaagggacagaaagacataagagcatacctctaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41936605 |
ttttatacatataaagagataaaatgtacagcatgagaaagcattgttaggagggtacgagacattaagggacagaaagacataagagcatacctctaga |
41936506 |
T |
|
| Q |
101 |
gccatgcattatggactttctttcatggagtgttgcagctacatatctcagcagctgtttaaaattgaaatcctaattaacccaaattgaatatatggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41936505 |
gccatgcattatggactttctttcatggagtgttacagctacatatctcagcagctgtttaaaattgaaatcctaattaacccaaattgaatatatggat |
41936406 |
T |
|
| Q |
201 |
aatactaatcctagtattatcacaatggcccacagcaactaatgactaatgagtatgatatgttaccaaaaagtgaagtggaatatccaaattagtcttg |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41936405 |
aatactaatcc----------acaatggcccacagcaactaatgactaatgagtatgatatgttaccaaaaagggaagtggaatatccaaattagtcttg |
41936316 |
T |
|
| Q |
301 |
tgcgaagcacctgatttcttcatattacaagtctaagagcctacaacaaagctaaagaacatgtaatgactgaattaagcagtaaaaattatagaaattg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41936315 |
tgcgaagcacctgatttcttcatattacaagtctaagagcctacaacaaagctaaagaacatgtaatgactgagttaagcagtaaaaattatagaaattg |
41936216 |
T |
|
| Q |
401 |
aaatcatattttatcgtaaaataatggaagaaaaattacctgttgaaatcaaagttcaagcttgctaaatccatttgccatcaaccatgatgcctctgat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41936215 |
aaatcatattttatcgtaaaataatggaagaaaaattacctgttgaaatcaaagttcaagcttgctaaatccatttgccatcaaccatgatgcctctgat |
41936116 |
T |
|
| Q |
501 |
ttgggaaattttgggccaaatttgcaggtgtttcatgcggcacctttcttcc |
552 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41936115 |
gagggaaattttgggccaaatttgcgggtgtttcatgcggcacctttcttcc |
41936064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 46 - 323
Target Start/End: Original strand, 4304229 - 4304505
Alignment:
| Q |
46 |
gttaggagggtacgagacattaagggacagaaagacataagagcatacctctagagccatgcattatggactttctttcatggagtgttgcagctacata |
145 |
Q |
| |
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||||| ||||||||||||||| || |||| ||||| ||||||||||||||||||||||| ||||| | ||||||||||| || ||||| ||||||| || |
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| T |
4304229 |
gttagaagggtacgagacattcagtgacatgaagacgtaagagcatacctctagagccatccattacgaactttctttcacggggtgtt-cagctactta |
4304327 |
T |
|
| Q |
146 |
tctcagcagctgtttaaaattgaaatcctaattaacccaaattgaatatatggataatactaatcctagtattatcacaatggcccacagcaactaatga |
245 |
Q |
| |
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|| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||||| |||| ||| |||||| |
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| T |
4304328 |
tccgagcagctgtttaaaatggaaatcctaattaactcaaatcaaatatatggataatactaatcctagcagtatcacaatggatcacaacaattaatga |
4304427 |
T |
|
| Q |
246 |
ctaatgagtatgatatgttaccaaaaagtgaagtggaatatccaaattagtcttgtgcgaagcacctgatttcttcat |
323 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||| |
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| T |
4304428 |
cgaatgagtatgatatgttaccaaaaagtgaagtggaatatccaaactaggcttgtatgaagcacctgatatcttcat |
4304505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 431 - 552
Target Start/End: Original strand, 4311752 - 4311874
Alignment:
| Q |
431 |
aaaaattacctgttgaaa-tcaaagttcaagcttgctaaatccatttgccatcaaccatgatgcctctgatttgggaaattttgggccaaatttgcaggt |
529 |
Q |
| |
|
|||||||||||||||||| || ||| ||||| | ||||||||||||| ||||||||| | ||||||| ||| ||||| ||||||||||||||||| ||| |
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| T |
4311752 |
aaaaattacctgttgaaaatccaagctcaagttggctaaatccattttccatcaaccttaatgcctcggatatgggatattttgggccaaatttgtgggt |
4311851 |
T |
|
| Q |
530 |
gtttcatgcggcacctttcttcc |
552 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
4311852 |
gtttcatgcggcaccgttcttcc |
4311874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 4250079 - 4249934
Alignment:
| Q |
83 |
taagagcatacctctagagccatgcattatggactttctttcatggagtgttgcagctacatatctcagcagctgtttaaaattgaaatcctaattaacc |
182 |
Q |
| |
|
||||||||||||||| ||||||| | |||| |||| ||||||||||||| ||||||||||| ||||||||| | ||||| |||||||||| |||| |
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| T |
4250079 |
taagagcatacctctggagccatctggtttggaatttccttcatggagtgtt-cagctacatattccagcagctgctaaaaatggaaatcctaagtaact |
4249981 |
T |
|
| Q |
183 |
caaattgaatatatggataatactaatcctagtattatcacaatggc |
229 |
Q |
| |
|
||| | |||||| |||||||||| |||||| | |||||||||||| |
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| T |
4249980 |
caagattaatataaggataatactcatcctatcagtatcacaatggc |
4249934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 4304771 - 4304833
Alignment:
| Q |
490 |
atgcctctgatttgggaaattttgggccaaatttgcaggtgtttcatgcggcacctttcttcc |
552 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||| |
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| T |
4304771 |
atgcctcggatgtgggatattttgggccaaatttgcgggtgtttcatgaggcacccttcttcc |
4304833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 4303740 - 4303776
Alignment:
| Q |
358 |
aacatgtaatgactgaattaagcagtaaaaattatag |
394 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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| T |
4303740 |
aacatgtaatgattgaattaagcagtaaaaattatag |
4303776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 23111838 - 23111971
Alignment:
| Q |
1 |
ttttatacatataaa-gagataaaatgtacagcatgagaaagcattgttaggagggtacgagacattaagggacagaaagacataagagcatacctctag |
99 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||||||||| |||| | ||||||||||||||| |||||| |||| || || ||||||||||||| ||| |
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| T |
23111838 |
ttttatacacataaacgagataaaatgtattgcatgagaaggcatggctaggagggtacgagaaattaagtgacatgaatacgtaagagcatacctttag |
23111937 |
T |
|
| Q |
100 |
agccatgcattatggactttctttcatggagtgtt |
134 |
Q |
| |
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|||||| | ||||||||||||| ||||||||||| |
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| T |
23111938 |
agccat-aagtatggactttcttacatggagtgtt |
23111971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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