View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13227_low_3 (Length: 371)
Name: NF13227_low_3
Description: NF13227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13227_low_3 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 325
Target Start/End: Original strand, 897 - 1220
Alignment:
| Q |
2 |
ttgagaccaaaatgatggataaaagatatatttaaggatgtgtttactattaattcaatattgtagttcaaaaatctaaattgtttgtctacccnnnnnn |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
897 |
ttgagaccaaaatgatggataaaagatatatttaaggatgtgtttactattaattcaatattgtagttcaaaaatctaaattgtttgtctacccaaaaaa |
996 |
T |
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| Q |
102 |
nnnnnnnnnnnngtacacatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgc |
201 |
Q |
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| T |
997 |
tataaaataaaagtacacatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgc |
1096 |
T |
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| Q |
202 |
aaatatgacaaatacactctttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttcttc |
301 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1097 |
aaatatgacaaatacactctttgactggtctatttcctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttcttc |
1196 |
T |
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| Q |
302 |
ctttaaagattcattaacttccag |
325 |
Q |
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| T |
1197 |
ctttaaagattcattaatttccag |
1220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 18234973 - 18234861
Alignment:
| Q |
199 |
tgcaaatatgacaaatacactctttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttc |
298 |
Q |
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| T |
18234973 |
tgcaaatacgataaacaaactcattgactggtctaattcctactcatcaacattgaactgtgcatgtgacatgtc-aaaatttatattgggttcattttt |
18234875 |
T |
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| Q |
299 |
ttcctttaaagatt |
312 |
Q |
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| T |
18234874 |
ttcctttaaagatt |
18234861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 18235105 - 18235068
Alignment:
| Q |
9 |
caaaatgatggataaaagatatatttaaggatgtgttt |
46 |
Q |
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| T |
18235105 |
caaaatgatcgataaaagatatatttatggatgtgttt |
18235068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 6845103 - 6845049
Alignment:
| Q |
222 |
ttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaa |
276 |
Q |
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| T |
6845103 |
ttgactggtctaattcctgctcatcaacattcaactgtgcatgtgacatgtcaaa |
6845049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 6825969 - 6825884
Alignment:
| Q |
118 |
acatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgcaaa |
204 |
Q |
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|||| |||||||| |||| |||||| || |||| |||||||| ||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
6825969 |
acatggcatgtgggttctcttagtaattgtggcacaagccaactttactttt-tgttagctattttgtttttccatttgtgtgcaaa |
6825884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 6813976 - 6813892
Alignment:
| Q |
118 |
acatagcatgtggattcttttagtatttttggctcaagccaaa-tttacttttatgttagttatttgccttttccatttgtgtgcaaa |
204 |
Q |
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| T |
6813976 |
acatagcatgtgggttcta--agtattcttggcacaagccaaactttactttt-tgttagctatttggtttttccatttgtgtgcaaa |
6813892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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