View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13227_low_4 (Length: 360)
Name: NF13227_low_4
Description: NF13227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13227_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29513922 - 29514153
Alignment:
| Q |
1 |
tcatcatgctagggttcttatcaggcagagacacatcaggtatgtatattgctttcatcctg--------gt--atctgatttttaatggtagagatcct |
90 |
Q |
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| T |
29513922 |
tcatcatgctagggttcttatcaggcagagacacatcaggtatgtatattgctttcatcctgacattggtgttaatctgatttttaatggtagagatcct |
29514021 |
T |
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| Q |
91 |
ctccattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatac-----tcaaatgtcacagattttggaaatgtgtaatttt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29514022 |
ctccattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatactcaagtcaaatgtcacagattttggaaatgtgtaatttt |
29514121 |
T |
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| Q |
186 |
atatcatttttacacctaaaactataattgtt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
29514122 |
atatcatttttacacctaaaactataattgtt |
29514153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 43625718 - 43625850
Alignment:
| Q |
84 |
agatcctctccattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatactcaaatgtcacagattttggaaatgtgtaatt |
183 |
Q |
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||||| ||| ||||||||||| |||||||| || ||| ||||| ||||| |||| |||||||||||||| |||||||| |||||| ||||||| ||| |
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| T |
43625718 |
agatcatctgcattgttcaagaaatggaggtcttctgaactattgtttt-tctgattaattaaaatactgaaatgtcattaattttgagaatgtgtcatt |
43625816 |
T |
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| Q |
184 |
ttatatcatttttacacctaaaactataattgtt |
217 |
Q |
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||||||||||||||||||||||||| || ||||| |
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| T |
43625817 |
ttatatcatttttacacctaaaactgtacttgtt |
43625850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 29514258 - 29514319
Alignment:
| Q |
291 |
taatgttttttatttatttaactggtcataatgaaatatgtttgggaatggatgatgatgtc |
352 |
Q |
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|||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
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| T |
29514258 |
taattttttttatttatttatctagtcataatgaaatatgtttgggaatggatgataatgtc |
29514319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 207209 - 207059
Alignment:
| Q |
94 |
cattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatactcaaatgtcacagattttggaaatgtgtaattttatatcatt |
193 |
Q |
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| T |
207209 |
cattgttcaagtaatggagggctcctcaactatggtttt-tctgattaattaaaatactcaaatgtcactaattttttaaatgtgtaattttatatcatt |
207111 |
T |
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| Q |
194 |
tttacacctaaaactataattgtttgtgtgaatgaaatgaagagaaatgtagagaat |
250 |
Q |
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| T |
207110 |
tttacacctaaaacta-----gttggtgtgaatgaaatgaagagaaatagagagaat |
207059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 201338 - 201380
Alignment:
| Q |
1 |
tcatcatgctagggttcttatcaggcagagacacatcaggtat |
43 |
Q |
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|
| T |
201338 |
tcatcatgctagggttcttatcaggcagaggcacatcaggtat |
201380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 207902 - 207864
Alignment:
| Q |
5 |
catgctagggttcttatcaggcagagacacatcaggtat |
43 |
Q |
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| T |
207902 |
catgctagggttctaatcaggcagaggcacatcaggtat |
207864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24652621 - 24652660
Alignment:
| Q |
1 |
tcatcatgctagggttcttatcaggcagagacacatcagg |
40 |
Q |
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| T |
24652621 |
tcatcatgctagggttctaatcaggcagaggcacatcagg |
24652660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6900737 - 6900779
Alignment:
| Q |
1 |
tcatcatgctagggttcttatcaggcagagacacatcaggtat |
43 |
Q |
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|||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
6900737 |
tcatcacgctagggttcttatcagacagaggcacatcaggtat |
6900779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 44924865 - 44924832
Alignment:
| Q |
319 |
taatgaaatatgtttgggaatggatgatgatgtc |
352 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
44924865 |
taatgaaatatgtttgggaatggatgataatgtc |
44924832 |
T |
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