View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13228_high_4 (Length: 363)
Name: NF13228_high_4
Description: NF13228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13228_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 32889044 - 32889235
Alignment:
| Q |
12 |
atgaaccacatgtttttaagtggaactcggtgc-aaataatcgagagtataaaattattttaaattaattgtaagaatgaatcatcatgttgttaagtgg |
110 |
Q |
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| T |
32889044 |
atgaaccacatgtttttaagtggaactcggtgccaaataatcgagagtataaaattattttaaattagttgtaaaaatgaatcatcatgttgttaagtgg |
32889143 |
T |
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| Q |
111 |
aactcagcagcaccaaataaacgataacatgaaaatattttaaattagtactaaaaatgaatcaccatgttgttaaacaaggacatctcaat |
202 |
Q |
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| T |
32889144 |
aactcagcagcaccaaataaacgataacatgaaaatattttaaattagtactaaaaatgaatcacaatgttgttaaacaaggacatctcaat |
32889235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 32892962 - 32893056
Alignment:
| Q |
250 |
atactctactactgtcttggattctagtactgttttatacatgtctattcaaaagtcctagtcatggatttgattacatttcagaatgggaattt |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32892962 |
atactctactactgtcttggattctagtactgttttatacatgtctattcaaaagtcctagtcatggatttgattacatttcataatgggaattt |
32893056 |
T |
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