View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13228_low_2 (Length: 424)
Name: NF13228_low_2
Description: NF13228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13228_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 71 - 409
Target Start/End: Complemental strand, 42769254 - 42768917
Alignment:
| Q |
71 |
ttattgtctgtttttggtcattgttatttcatttgtcttaannnnnnnngtttgtccccgcgagcttaaaccatacatcaaatcaaatatcattacatca |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769254 |
ttattgtctgtttttggtcattgttatt-catttgtcttaattttttttgtttgtccccgcgagcttaaaccatacatcaaatcaaatatcattacatca |
42769156 |
T |
|
| Q |
171 |
ttctcattcttttaattgatagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtgcagttgatgccaaagctgat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769155 |
ttctcattcttttaattgatagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtgcagttgatgccaaagctgat |
42769056 |
T |
|
| Q |
271 |
cgtgcatcttcagatgatgcgtaagaatacttacttacttttctactaagttgtttgagttttaagttttgttaattgtatattaattatctcttaattg |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42769055 |
cgtgcatcttcagatgatgcgtaagaatacttacttacttttctactaagttgtttgagttttaagttttgttaattgtatattaattatctcttaattg |
42768956 |
T |
|
| Q |
371 |
caatctattccactgttgtagccttctttgcaagaaagg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42768955 |
caatctattccactgttgtagccttctttgcaagaaagg |
42768917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42769383 - 42769311
Alignment:
| Q |
1 |
atgttactcttggtaacaagaaaatgctcaaggtatattattaagcaaactttctttactagataatgattta |
73 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42769383 |
atgttactcttggtaacaagaaaatactcaaggtatattattaagaaaactttctttactagataatgattta |
42769311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 42762245 - 42762127
Alignment:
| Q |
180 |
ttttaattgatagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtgcagttgatgccaaagctgatcgtgcatct |
279 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| | || |||||||||||||| |||||||| |||||||| | ||||| |||| ||||| || ||| |
|
|
| T |
42762245 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
42762146 |
T |
|
| Q |
280 |
tcagatgatgcgtaagaat |
298 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
42762145 |
gcagaggatgcgtaagaat |
42762127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 42735329 - 42735389
Alignment:
| Q |
190 |
tagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtg |
250 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| | ||||| ||||||| |
|
|
| T |
42735329 |
tagggagctagcctttcagagtctcacttaccacctcataagttgtttccattgataagtg |
42735389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23040949 - 23040987
Alignment:
| Q |
1 |
atgttactcttggtaacaagaaaatgctcaaggtatatt |
39 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
23040949 |
atgttattcttggtaacaagaaaatactcaaggtatatt |
23040987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University