View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13228_low_3 (Length: 412)
Name: NF13228_low_3
Description: NF13228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13228_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Original strand, 11321388 - 11321777
Alignment:
| Q |
10 |
ctctttgatgtgaaatatccttttgtgatctatacgaactccctgccaataccaaacaatgtcttaaattttcttactttacaatagtttacaaccttat |
109 |
Q |
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| T |
11321388 |
ctctttgatgtgaaatatccttttgtgatctatacgaattccctgccaataccaaacaatgtcttaaattttcttactttacaatagtttacaaccttat |
11321487 |
T |
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| Q |
110 |
atacaaaatcttgatttatcgttacagaaaaaa-ctaagcttgaacgaaattgtnnnnnnnnncaacggctacaatccaagttcatcctagtagataatt |
208 |
Q |
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| T |
11321488 |
atacaaaatcttgatttatcgttacagaaaaaaactaagcttgaacgaaattgaaaaaaaaaacaacggctacaatccaagttcatcctagtagataatt |
11321587 |
T |
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| Q |
209 |
ttatgagagcatcatttacatttcatccatttaaaacacagtgttggtcatttaagtatgatatcaattatcatacagggtaaactcctaaatccatgtg |
308 |
Q |
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| T |
11321588 |
ttatgagagcatcatttacatttcatccatttaaaacacagtgttggtcatttaagtatgatatcaattatcatacagggtaaactcctaaatccatgtg |
11321687 |
T |
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| Q |
309 |
ttttatttttccaaattaataccagaccctcttaactcattaactaaattaacttacagaatgcacattctagttctaggaacatatata |
398 |
Q |
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| T |
11321688 |
ttttatttttccaaattaataccagaccctcttaactcattaactaaattaacttacagaatgcacattctagctctaggaacatatata |
11321777 |
T |
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