View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13228_low_6 (Length: 331)
Name: NF13228_low_6
Description: NF13228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13228_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 53213618 - 53213325
Alignment:
| Q |
7 |
agtatatcttcaaattattatatctcaatcaattttatannnnnnnagtaatatgaagttacagttacctttcaaacatcatttttagttacacagattt |
106 |
Q |
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| T |
53213618 |
agtatatcttcaaattattatatctcaatcaattttatatttttttagtaatatgaagttacaattacctttcaaacatcatttttagttacacagattt |
53213519 |
T |
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| Q |
107 |
gttattaaattcgtatttaggtaaatatatctcaattttatattgaatttactttatattaaagagttcatttaaaatggcaatttcttggcctttatta |
206 |
Q |
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| T |
53213518 |
gttattaaattcgtatttaggtaaatatatctcaattttatattgaatttactttatattaaagagttcatttaaaatggcaatttcttggcctttatta |
53213419 |
T |
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| Q |
207 |
ataggtaaatctgaatacctccacttatttgtacatgtcttggaagcggaatctcttggccttcttccctctttaaaaatgacaatttccaatg |
300 |
Q |
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| T |
53213418 |
ataggtaaatctgaatacctccacttttctgtatatgtcttggaagcggaatctcttggccttctcccctctttaaaaatggcaatttccaatg |
53213325 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 42703044 - 42702954
Alignment:
| Q |
202 |
tattaataggtaaatctgaatacctccacttatttgtacatgtcttggaagcggaatctcttggccttcttccctctttaaaaatgacaat |
292 |
Q |
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| T |
42703044 |
tattaatgggtaaatctgaatacttgcacttatctgtatctatcctggaagctgaatctcttggtcttctccactctctaaaaatggcaat |
42702954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 5896617 - 5896539
Alignment:
| Q |
210 |
ggtaaatctgaatacctccacttatttgtacatgtcttggaagcggaatctcttggccttcttccctctttaaaaatga |
288 |
Q |
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| T |
5896617 |
ggtaaatctgaatacttgcacttatttgtatctgtcctggaagctgaatctctaggtcttctctactctctaaaaatga |
5896539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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