View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13228_low_7 (Length: 257)
Name: NF13228_low_7
Description: NF13228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13228_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40508906 - 40508687
Alignment:
| Q |
1 |
tagacttcaccccatgaatggaagatggtgtaggaggacacccaacattaccacctacaggagtaggagatggtacatttataggtaccggagggttact |
100 |
Q |
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| T |
40508906 |
tagacttcaccccatgaatggaagatggtgtaggaggacacccaacattaccacctacaggagtaggagatggtacatttataggtgctggagggttact |
40508807 |
T |
|
| Q |
101 |
cgtgccaccactaggttgaggagcagaaccatttggtgataactgtggagatatctttggtacttgatgttgtggaggtgatgctgatggtgttggtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40508806 |
cgtgccaccactaggttgaggagcagaaccatttggtgataactgtggagatatctttggtacttgatgttgtggaggtgatgctgatggtgttggtgga |
40508707 |
T |
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| Q |
201 |
ttttttgggggaatttgatg |
220 |
Q |
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|||| ||||||||||||||| |
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| T |
40508706 |
ttttgtgggggaatttgatg |
40508687 |
T |
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