View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13228_low_9 (Length: 239)
Name: NF13228_low_9
Description: NF13228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13228_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 46736203 - 46736424
Alignment:
| Q |
18 |
aacataggcttagtcatttattagttcctatatatcacacagtaaactctttaggctgtcatcatatgaccataaatattaagtatttttaactaaattt |
117 |
Q |
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| T |
46736203 |
aacataggcttagtcatttattagttcctatatatcacacagtaaactctttaggctttcatcatatgaccataaatattaagtatttttaactaaattt |
46736302 |
T |
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| Q |
118 |
actcttattaagtatcaaagtattcataagagtgctccctgtaacgccgtcatcttttaatattattttcatccatagacattttctcttgaaatacttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46736303 |
actcttattaagtatcaaagtattcataagagtgctccctgtaacgccgtcatcttttaatattattttcatccatagatgttttctcttgaaatacttt |
46736402 |
T |
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| Q |
218 |
attaagtttcatacatcattct |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
46736403 |
attaagtttcatacatcattct |
46736424 |
T |
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