View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13229_high_4 (Length: 424)
Name: NF13229_high_4
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 35400491 - 35400887
Alignment:
| Q |
10 |
ataattctagtgaagaaggaaaagggcgtggaagtacggttagacaatatgtgaggtcgaaaatgcctaggcttcgttggactcctgatcttcatttatc |
109 |
Q |
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| T |
35400491 |
ataattctagtgaagaaggaaaagggcgtggaagtacggttagacaatatgtgaggtcgaaaatgcctaggcttcgttggactcctgatcttcatttatc |
35400590 |
T |
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| Q |
110 |
ttttgtgcatgctgttgagaggcttggagggcaagaaagtaagtgtgactcatttcaatcttatgaatataaatttgcataatgtaatgtggattttatc |
209 |
Q |
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| T |
35400591 |
ttttgtgcatgctgttgagaggcttggagggcaagaaagtaagtgtgactcatttcaatcttatgaatataaatttgcataatgtaatgtggattttatc |
35400690 |
T |
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| Q |
210 |
taatttcattatctttggcaaccaatgaaacaagtcatgagttgtgtacttgttgggctcaagtgtgagtgactagtcaaacatcaatcatgaatatgct |
309 |
Q |
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| T |
35400691 |
taatttcattacctttggcaaccaatgaaacaagtcatgagttgtgtacttgttgggctcaagtgtgagtgactagtcaaacatcaatcatgaatatgct |
35400790 |
T |
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| Q |
310 |
aaatgttggatatatagagaactcgtatacctaatatctttagattttgagtggagatggtgcgtatctctttgtcttgtaatcctgagactaatac |
406 |
Q |
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| T |
35400791 |
aaatgttggatatagagagaactcatatacctaatatctttagattttgagtggagatggtgcgtatctctttgtcttgtaatcctgagactaatac |
35400887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 4926868 - 4926763
Alignment:
| Q |
47 |
ggttagacaatatgtgaggtcgaaaatgcctaggcttcgttggactcctgatcttcatttatcttttgtgcatgctgttgagaggcttggagggcaagaa |
146 |
Q |
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| T |
4926868 |
ggttagacattatgttagatccaagatgcctaggttaaggtggactcctgagcttcatcattcttttttgcatgctgttgaaagacttggtggtctagaa |
4926769 |
T |
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| Q |
147 |
agtaag |
152 |
Q |
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|||||| |
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| T |
4926768 |
agtaag |
4926763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 35848302 - 35848405
Alignment:
| Q |
51 |
agacaatatgtgaggtcgaaaatgcctaggcttcgttggactcctgatcttcatttatcttttgtgcatgctgttgagaggcttggagggcaagaaagta |
150 |
Q |
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| T |
35848302 |
agacaatatgttagatcaaagatgcctaggcttcggtggactcctgatcttcatcactcctttatgcatgctgttgaaaggcttggaggccaagagagta |
35848401 |
T |
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| Q |
151 |
agtg |
154 |
Q |
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|||| |
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| T |
35848402 |
agtg |
35848405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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