View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13229_low_10 (Length: 235)
Name: NF13229_low_10
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30730076 - 30730309
Alignment:
| Q |
1 |
atatgtgtttagctacctttgctgaagcaattggtctacttatggagtatattttattccttcaaaaaattaagtatttttattatattttataagctac |
100 |
Q |
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| T |
30730076 |
atatgtgtttagctacctttgctgaagcaattggtctacttatggagtatattttattcctt-aaaaaatgaagtatttttattatattttataagctac |
30730174 |
T |
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| Q |
101 |
ttatggagtatttgtttatgtaatattcctgcacacatggatttggaagccgattaagatacgacatagtattaccattatcattaattataaaatagaa |
200 |
Q |
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| T |
30730175 |
ttatggagtatttgtttatttaatattcctgcacacatggatttggaagccgattaagatacgacatagtattaccattatcattaattataaaatagaa |
30730274 |
T |
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| Q |
201 |
tttaacagccatgcatctacgtagtacgtactatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30730275 |
tttaacagccatgcatctacgtagtacgtactatt |
30730309 |
T |
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