View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13229_low_2 (Length: 614)
Name: NF13229_low_2
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 13 - 599
Target Start/End: Original strand, 973234 - 973820
Alignment:
| Q |
13 |
aatattgataaaaatgacatattaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacacttttggcctttg |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
973234 |
aatattgataaaaatgacatgttaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacacttttggcctttg |
973333 |
T |
|
| Q |
113 |
gattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatcttgttcaacgtataacacatcagaag |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
973334 |
gattgtgacacgacaggcttgatctttctctgagttggtatggtctaatatagttcaactcctttagtataatcttgttcaacgtataacacatcagaag |
973433 |
T |
|
| Q |
213 |
acacgtcctacaattcaacataaaacaaacaagataaagtaatgcctcatgtaaaaatcaatctcatctgtacatctgaaatacaatcttgttcagcaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
973434 |
acacgtcctacaattcaacataaaacaaacaagataaagtaatgcctcatgtaaaaatcaatctcatctgtacatctgaaatacaatcttgttcagcaca |
973533 |
T |
|
| Q |
313 |
actaaaaatcaagcataaaagcaatatctagtatgcacaaataggagccctagtaggcaactataacttgcctctgaatgttnnnnnnnnnnnnnnncaa |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
973534 |
actaaaaatcaagcataaaagcaatatctagtatgcacaaataggagccctagtaggcaactataacttgcctctgaatgttaaaaaattaaaaaaacaa |
973633 |
T |
|
| Q |
413 |
taaccagattttcgtatacctcattaacagctctagtaggcgatttccatattcctttgcgactgaatctcctgttcctttcctgaaagaaacacagtga |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
973634 |
taaccagattttcgtatacctcattaacagctctagtaggtgatttccatattcctttgcgactgaatctcctgttcctttcctgaaagaaacacagtga |
973733 |
T |
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| Q |
513 |
agtccttgccaaaatagaccagtttgatgcaaaactcctatatttcttgaggctgaagtagtagttcagtgagtgtagcatactgtt |
599 |
Q |
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| T |
973734 |
agtccttgccaaaatagaccagtttgatgcaaaactcctatatttcttgaggctgaagtagtagttcagtgagtgtagcatactgtt |
973820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 93 - 582
Target Start/End: Original strand, 8528322 - 8528819
Alignment:
| Q |
93 |
aataacacttttggcctttggattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatcttgttc |
192 |
Q |
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||||||| ||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8528322 |
aataacattttcggcgtttggtttgtgacacgacaggcttgatctttctatgtgttggtatggtctaatatagttcaactcatttagtataatcttgttc |
8528421 |
T |
|
| Q |
193 |
aacgtataacacatcagaagacacgtcctacaattcaacataaaacaaacaagataaagtaatgcctcatgtaaaaatcaatctcatctgtacatctgaa |
292 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
8528422 |
aacgtaaaacacatcaaaagacacgtcctacaattcaacgtaaaacaaaaaagataaagtaatgcctcatgtgaaaatcaatcttatctgtacatctgaa |
8528521 |
T |
|
| Q |
293 |
atacaatcttgttcagcacaactaaaaatcaagcataaaagc-aatatcta--------gtatgcacaaataggagccctagtaggcaactataacttgc |
383 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||| ||| ||| |||||||| ||||| ||| |
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| T |
8528522 |
atacaatcttgttcagcacaact-aaaagcaagcataaaagcaaatatctaactccatgatatgcacaaataaaagctctactaggcaac-ataacctgc |
8528619 |
T |
|
| Q |
384 |
ctctgaatgtt-nnnnnnnnnnnnnnncaataaccagattttcgtatacctcattaacagctctagtaggcgatttccatattcctttgcgactgaatct |
482 |
Q |
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||||||||||| | ||||| || |||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
8528620 |
ctctgaatgttaaaaaatttaaataaacgataactagtttttcgtataccccattaacagctctagtaggtgattttcatattcctttgcagctgaatct |
8528719 |
T |
|
| Q |
483 |
cctgttcctttcctgaaagaaacacagtgaagtccttgccaaaatagaccagtttgatgcaaaactcctatatttcttgaggctgaagtagtagttcagt |
582 |
Q |
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| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
8528720 |
catgttcctttcctgaaagaaacacagtaaagtccttgtcaaaatagaccagtttgatgcaaaacccctatatttctcgaggctgaagtagtagttcagt |
8528819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 8340054 - 8340102
Alignment:
| Q |
269 |
atcaatctcatctgtacatctgaaatacaatcttgttcagcacaactaa |
317 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||| ||||||||| |
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| T |
8340054 |
atcaatctcatttatacatctgaaatacaatcttgttcaacacaactaa |
8340102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 8527887 - 8527934
Alignment:
| Q |
20 |
ataaaaatgacatattaactttgaatagagcaggaagtcttgtgtctt |
67 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
8527887 |
ataaaaatggcaccttaaccttgaatagagcaggaagtcttgtgtctt |
8527934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 427 - 499
Target Start/End: Complemental strand, 37358190 - 37358118
Alignment:
| Q |
427 |
tatacctcattaacagctctagtaggcgatttccatattcctttgcgactgaatctcctgttcctttcctgaa |
499 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||| | ||| ||||||||| |
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| T |
37358190 |
tatacctcattaacagctccagtaggcaatttccatattcctttaccactgaatctaccgtttttttcctgaa |
37358118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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