View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13229_low_3 (Length: 525)
Name: NF13229_low_3
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_low_3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 41591318 - 41590795
Alignment:
| Q |
1 |
aatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagcannnnnnnnnncatttggaagaaacacaaacatgagagt |
100 |
Q |
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| T |
41591318 |
aatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagcattttttttt-catttggaagaaacacaaacatgagagt |
41591220 |
T |
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| Q |
101 |
aaatttaccnnnnnnncccttcaaatcaatatacctctgaaacattttggtacacaaatttaccaaatgaggcctttgtttggaactgtgctgggaagcc |
200 |
Q |
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| T |
41591219 |
aaattcacctttttttcccttcaaatcaatatacctctgaaacattttggtacacaagtttaccaaatgaggcctttgtttggaactgttctgggaagcc |
41591120 |
T |
|
| Q |
201 |
tgatagacgcgtgtttttcggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaacca |
300 |
Q |
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| T |
41591119 |
tgatagacgcgtgtttttctgaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcgactgcggtgaaaagaagtggaacca |
41591020 |
T |
|
| Q |
301 |
aacactctagacaattagtctcttaatttaaaaaatatcattgaaattagtctttttcttgaactagcaccataattttaaaggttttagtttgtcttaa |
400 |
Q |
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| T |
41591019 |
aacactctaaacaattagtctcttaatttaaaaaatatcgttgaaattagtctttttcttgaactagcaccataattttaaaggttttagtttgtcttaa |
41590920 |
T |
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| Q |
401 |
tgcatcctgagattgttcaaagcaatatataagtctttcattaattttaatagctagtttctatataaatattatagtggagagactaaattactatttt |
500 |
Q |
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| T |
41590919 |
tgcatcctgagattgttcaaagcaatatataagtctttcattaattttaatagctagtttctatataaatattatagtggagagactaaattactatttt |
41590820 |
T |
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| Q |
501 |
gcaaatttgaaaaactgaattgttt |
525 |
Q |
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| T |
41590819 |
gcaaatttgaaaaactgaattgttt |
41590795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 220 - 461
Target Start/End: Complemental strand, 41584496 - 41584262
Alignment:
| Q |
220 |
ggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaaacactctagacaattagt |
319 |
Q |
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| T |
41584496 |
ggaagcaacaaatattaacttctcattttcacatcaaaaggtcttatggacgcgcgattgtggtgaaaagaagtggaaccaaacagtctagacaa----- |
41584402 |
T |
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| Q |
320 |
ctcttaatttaaaaaatatcattgaaattagtctttttcttgaactagcaccataattttaaaggttttagtttgtcttaatgcatcctgagattgttca |
419 |
Q |
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| T |
41584401 |
--cttaaattaaaaaatatcgatgaaaatagtctttttcttgaactagcaccataattttaaaggttttagtttgtcctaatgcatcctgggattattca |
41584304 |
T |
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| Q |
420 |
aagcaatatataagtctttcattaattttaatagctagtttc |
461 |
Q |
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| T |
41584303 |
aagcaatatataagtctttcattaattttaatagctagtttc |
41584262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 220 - 461
Target Start/End: Complemental strand, 41572083 - 41571844
Alignment:
| Q |
220 |
ggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaaacactctagacaa-ttag |
318 |
Q |
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| T |
41572083 |
ggaagcaacaaatgttaacttctcattttcaggtcaaaaaatctcatggatgcgcgactgtggtgaaaagaagtggaaccaaacagtctcgacagcttaa |
41571984 |
T |
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| Q |
319 |
tctcttaatttaaaaaatatcattgaaattagtctttttcttgaactagcaccataattttaaaggttttagtttgtcttaatgcatcctgagattgttc |
418 |
Q |
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| T |
41571983 |
tctctcaaattaaaaaatatcgatgaaaatagtcttttt-ttgaactagcaccataattttaaaagttttagtttgtcctaatgcatc--gagattattc |
41571887 |
T |
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| Q |
419 |
aaagcaatatataagtctttcattaattttaatagctagtttc |
461 |
Q |
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| T |
41571886 |
aaagcaatatataagtctttcattaattttaatagctattttc |
41571844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41574865 - 41574804
Alignment:
| Q |
1 |
aatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagca |
62 |
Q |
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| T |
41574865 |
aatttgtggatcatactccatgctgctttccaacaccaaagatcaactaaacaacccaagca |
41574804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 6981155 - 6981057
Alignment:
| Q |
207 |
acgcgtgtttttcggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaaacac |
305 |
Q |
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| T |
6981155 |
acgcatgtttttccaaagaaacaaatgttagcttctcattatcaagtcaaaaggccttgtgaacgcgcagctgcggtaaaaagatatggaaccaaacac |
6981057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 3083849 - 3083809
Alignment:
| Q |
481 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
521 |
Q |
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| T |
3083849 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
3083809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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