View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13229_low_4 (Length: 488)

Name: NF13229_low_4
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13229_low_4
NF13229_low_4
[»] chr5 (26 HSPs)
chr5 (19-488)||(38029517-38029986)
chr5 (331-442)||(3907661-3907770)
chr5 (329-488)||(42419991-42420153)
chr5 (332-440)||(22399776-22399884)
chr5 (329-440)||(25545223-25545332)
chr5 (336-440)||(27195262-27195366)
chr5 (405-488)||(3907630-3907714)
chr5 (360-475)||(36059241-36059359)
chr5 (335-442)||(31273046-31273153)
chr5 (329-440)||(41169415-41169526)
chr5 (329-440)||(4190084-4190197)
chr5 (415-488)||(17474862-17474938)
chr5 (405-486)||(22399746-22399830)
chr5 (384-440)||(3771224-3771280)
chr5 (335-442)||(7721346-7721453)
chr5 (405-471)||(25545211-25545278)
chr5 (329-432)||(36005022-36005125)
chr5 (387-488)||(32309658-32309762)
chr5 (386-436)||(41106466-41106516)
chr5 (399-440)||(35244865-35244906)
chr5 (316-428)||(40530010-40530120)
chr5 (384-488)||(19332020-19332125)
chr5 (407-475)||(40927687-40927758)
chr5 (417-488)||(4158053-4158127)
chr5 (418-469)||(28907361-28907415)
chr5 (418-469)||(28943756-28943810)
[»] chr2 (42 HSPs)
chr2 (315-486)||(42094196-42094365)
chr2 (329-488)||(25666801-25666963)
chr2 (335-442)||(1469748-1469855)
chr2 (329-462)||(42029342-42029478)
chr2 (333-440)||(37810153-37810260)
chr2 (358-487)||(3466419-3466551)
chr2 (329-442)||(33069170-33069283)
chr2 (311-440)||(42251188-42251319)
chr2 (315-488)||(18719707-18719882)
chr2 (329-442)||(41496062-41496175)
chr2 (331-462)||(16209375-16209509)
chr2 (315-442)||(4237239-4237366)
chr2 (348-462)||(2683398-2683515)
chr2 (329-459)||(45300370-45300503)
chr2 (339-440)||(44247563-44247664)
chr2 (315-440)||(33171624-33171751)
chr2 (329-440)||(9430162-9430273)
chr2 (335-481)||(40358631-40358780)
chr2 (331-429)||(15194540-15194638)
chr2 (329-483)||(45300346-45300503)
chr2 (333-463)||(1930669-1930801)
chr2 (418-483)||(9430229-9430297)
chr2 (405-484)||(12779480-12779561)
chr2 (405-474)||(42029421-42029493)
chr2 (405-475)||(6979076-6979148)
chr2 (405-460)||(33171678-33171736)
chr2 (385-475)||(12703459-12703552)
chr2 (405-475)||(15194522-15194595)
chr2 (329-426)||(29160844-29160941)
chr2 (401-442)||(30841032-30841073)
chr2 (319-469)||(37810139-37810292)
chr2 (340-419)||(17383774-17383853)
chr2 (384-462)||(36283540-36283619)
chr2 (329-440)||(44487178-44487288)
chr2 (406-475)||(35715053-35715125)
chr2 (405-462)||(42251242-42251302)
chr2 (329-374)||(16209378-16209423)
chr2 (419-475)||(33069154-33069213)
chr2 (419-483)||(41496038-41496105)
chr2 (396-436)||(6978997-6979037)
chr2 (329-369)||(12779746-12779786)
chr2 (329-369)||(18719734-18719774)
[»] chr4 (34 HSPs)
chr4 (329-485)||(21433876-21434035)
chr4 (360-477)||(33413988-33414108)
chr4 (314-483)||(9023889-9024063)
chr4 (315-487)||(52374892-52375069)
chr4 (376-488)||(2324732-2324847)
chr4 (330-474)||(15134555-15134702)
chr4 (329-487)||(2247583-2247741)
chr4 (329-440)||(16457945-16458055)
chr4 (315-453)||(38036246-38036385)
chr4 (335-487)||(31758664-31758817)
chr4 (331-475)||(45654018-45654163)
chr4 (331-462)||(3688570-3688705)
chr4 (335-484)||(32286212-32286361)
chr4 (319-440)||(19382322-19382438)
chr4 (391-462)||(993219-993291)
chr4 (405-487)||(15134646-15134731)
chr4 (405-477)||(16577238-16577313)
chr4 (375-440)||(53127987-53128052)
chr4 (376-440)||(17181269-17181333)
chr4 (405-474)||(21433861-21433933)
chr4 (358-471)||(51577995-51578110)
chr4 (384-475)||(1338420-1338512)
chr4 (313-382)||(19382284-19382353)
chr4 (384-436)||(25592254-25592306)
chr4 (402-488)||(16577327-16577416)
chr4 (329-478)||(33414006-33414158)
chr4 (418-483)||(3688663-3688731)
chr4 (418-475)||(7403175-7403235)
chr4 (443-488)||(16458039-16458084)
chr4 (329-442)||(17508768-17508880)
chr4 (329-382)||(48791235-48791288)
chr4 (398-434)||(34119692-34119728)
chr4 (396-440)||(34397424-34397468)
chr4 (396-475)||(42516515-42516597)
[»] chr8 (39 HSPs)
chr8 (335-463)||(34504386-34504517)
chr8 (329-488)||(8402483-8402641)
chr8 (329-463)||(40175896-40176034)
chr8 (329-484)||(40694616-40694774)
chr8 (329-442)||(40696211-40696324)
chr8 (315-475)||(42072649-42072808)
chr8 (315-439)||(26018451-26018573)
chr8 (329-440)||(35586429-35586539)
chr8 (329-442)||(27072838-27072951)
chr8 (335-460)||(38835002-38835132)
chr8 (333-463)||(21124958-21125090)
chr8 (329-442)||(4994178-4994289)
chr8 (331-475)||(2288586-2288733)
chr8 (332-463)||(20271007-20271146)
chr8 (332-463)||(21057635-21057774)
chr8 (389-440)||(42209424-42209475)
chr8 (391-487)||(38357544-38357643)
chr8 (329-462)||(40175893-40176030)
chr8 (384-484)||(40566514-40566617)
chr8 (384-436)||(13260421-13260473)
chr8 (399-488)||(17893390-17893481)
chr8 (329-474)||(30649938-30650083)
chr8 (405-475)||(27072894-27072967)
chr8 (384-488)||(18998098-18998201)
chr8 (405-488)||(35586482-35586568)
chr8 (405-459)||(8402483-8402538)
chr8 (331-432)||(2171031-2171133)
chr8 (377-442)||(2478469-2478534)
chr8 (337-442)||(30262769-30262874)
chr8 (405-488)||(36009901-36009987)
chr8 (418-488)||(20271105-20271178)
chr8 (418-488)||(21057733-21057806)
chr8 (405-469)||(30650025-30650093)
chr8 (424-475)||(4994253-4994305)
chr8 (385-480)||(9814039-9814135)
chr8 (410-488)||(23848240-23848319)
chr8 (384-428)||(23848302-23848346)
chr8 (404-475)||(40694600-40694674)
chr8 (396-440)||(43042164-43042207)
[»] chr7 (36 HSPs)
chr7 (333-488)||(10056630-10056788)
chr7 (329-475)||(12275741-12275890)
chr7 (316-488)||(40134378-40134549)
chr7 (315-475)||(49106895-49107057)
chr7 (313-488)||(26862900-26863078)
chr7 (329-436)||(2276280-2276387)
chr7 (366-478)||(47497740-47497855)
chr7 (329-442)||(3235562-3235675)
chr7 (319-463)||(2276276-2276423)
chr7 (343-440)||(24516581-24516678)
chr7 (359-443)||(640901-640985)
chr7 (315-462)||(11201293-11201445)
chr7 (349-439)||(18802866-18802956)
chr7 (329-484)||(5443533-5443690)
chr7 (359-442)||(7526151-7526234)
chr7 (329-436)||(46074058-46074165)
chr7 (319-483)||(3235538-3235705)
chr7 (335-440)||(45200475-45200580)
chr7 (318-473)||(316351-316509)
chr7 (329-484)||(5452578-5452735)
chr7 (329-488)||(26647694-26647855)
chr7 (314-442)||(36992845-36992976)
chr7 (377-440)||(18089753-18089816)
chr7 (405-442)||(36129092-36129129)
chr7 (384-440)||(7017144-7017200)
chr7 (384-440)||(7032502-7032558)
chr7 (384-440)||(29356942-29356998)
chr7 (420-475)||(31042126-31042184)
chr7 (407-464)||(10056621-10056681)
chr7 (416-473)||(24516646-24516704)
chr7 (316-438)||(42986237-42986358)
chr7 (410-463)||(253661-253713)
chr7 (406-474)||(40803223-40803294)
chr7 (312-369)||(7017182-7017241)
chr7 (312-369)||(7032540-7032599)
chr7 (329-369)||(49107001-49107041)
[»] chr3 (39 HSPs)
chr3 (329-486)||(36480710-36480870)
chr3 (335-444)||(19158680-19158788)
chr3 (329-488)||(29955012-29955174)
chr3 (329-488)||(30004166-30004328)
chr3 (329-483)||(32880976-32881133)
chr3 (399-488)||(3901566-3901657)
chr3 (339-484)||(31205347-31205495)
chr3 (329-488)||(19560603-19560765)
chr3 (329-487)||(37341203-37341359)
chr3 (335-432)||(14345160-14345257)
chr3 (335-440)||(35357326-35357431)
chr3 (329-440)||(11532438-11532549)
chr3 (335-475)||(51541254-51541397)
chr3 (315-436)||(40554067-40554190)
chr3 (339-439)||(45332557-45332657)
chr3 (329-462)||(3901499-3901629)
chr3 (358-484)||(36007387-36007516)
chr3 (384-488)||(19554360-19554467)
chr3 (397-488)||(36026863-36026955)
chr3 (329-436)||(40117757-40117862)
chr3 (405-483)||(36480686-36480767)
chr3 (331-486)||(16729149-16729307)
chr3 (364-440)||(48240387-48240462)
chr3 (329-462)||(4276977-4277118)
chr3 (406-488)||(35415049-35415134)
chr3 (392-442)||(9145440-9145490)
chr3 (335-488)||(37189120-37189274)
chr3 (349-431)||(40763391-40763473)
chr3 (396-441)||(35527127-35527172)
chr3 (417-484)||(1458628-1458698)
chr3 (359-442)||(13777683-13777766)
chr3 (384-442)||(1753339-1753397)
chr3 (378-440)||(30268084-30268146)
chr3 (398-474)||(16993339-16993416)
chr3 (396-484)||(26986271-26986362)
chr3 (403-440)||(31524094-31524131)
chr3 (396-440)||(4304786-4304830)
chr3 (384-436)||(48543440-48543492)
chr3 (341-405)||(53247791-53247855)
[»] chr1 (36 HSPs)
chr1 (329-463)||(31970123-31970260)
chr1 (315-474)||(38663639-38663803)
chr1 (329-440)||(2542705-2542816)
chr1 (335-477)||(49403457-49403602)
chr1 (331-488)||(7444255-7444415)
chr1 (332-440)||(34437623-34437730)
chr1 (313-475)||(34437583-34437749)
chr1 (329-458)||(45215332-45215463)
chr1 (330-440)||(45563091-45563201)
chr1 (351-432)||(23317942-23318023)
chr1 (329-440)||(40668954-40669065)
chr1 (335-442)||(731339-731446)
chr1 (404-475)||(21281464-21281539)
chr1 (316-475)||(5695665-5695826)
chr1 (343-440)||(40374054-40374150)
chr1 (329-453)||(45925111-45925238)
chr1 (405-487)||(49822607-49822692)
chr1 (329-426)||(49822566-49822664)
chr1 (405-488)||(7444360-7444446)
chr1 (384-442)||(11120321-11120379)
chr1 (424-488)||(15366475-15366542)
chr1 (319-440)||(32543719-32543840)
chr1 (384-471)||(22336889-22336973)
chr1 (329-463)||(31970119-31970256)
chr1 (405-475)||(40669008-40669079)
chr1 (405-471)||(16257603-16257672)
chr1 (359-434)||(33422662-33422737)
chr1 (319-375)||(35752132-35752190)
chr1 (384-469)||(34783405-34783493)
chr1 (384-442)||(39131621-39131679)
chr1 (363-412)||(18075217-18075266)
chr1 (405-442)||(38663730-38663767)
chr1 (336-440)||(939359-939463)
chr1 (418-469)||(16661808-16661862)
chr1 (329-468)||(38948086-38948228)
chr1 (412-440)||(39131588-39131616)
[»] chr6 (26 HSPs)
chr6 (329-488)||(12731557-12731719)
chr6 (379-443)||(3150231-3150295)
chr6 (391-484)||(1473593-1473689)
chr6 (391-488)||(28865384-28865484)
chr6 (335-478)||(4032996-4033147)
chr6 (378-440)||(6643367-6643429)
chr6 (376-438)||(11650916-11650978)
chr6 (379-475)||(4483355-4483452)
chr6 (329-441)||(24783890-24784002)
chr6 (333-487)||(5706595-5706751)
chr6 (335-488)||(479812-479967)
chr6 (378-447)||(26328213-26328282)
chr6 (411-488)||(12424939-12425017)
chr6 (406-488)||(5706699-5706784)
chr6 (422-488)||(31946914-31946983)
chr6 (340-457)||(31945641-31945759)
chr6 (418-486)||(17600697-17600768)
chr6 (384-440)||(9358244-9358299)
chr6 (419-485)||(9645010-9645079)
chr6 (419-485)||(9651027-9651096)
chr6 (405-475)||(12731541-12731614)
chr6 (422-469)||(12424886-12424935)
chr6 (399-440)||(3625142-3625183)
chr6 (329-369)||(31946914-31946954)
chr6 (384-440)||(31989192-31989248)
chr6 (405-433)||(33182284-33182312)
[»] scaffold0003 (1 HSPs)
scaffold0003 (358-488)||(136353-136486)
[»] scaffold0015 (2 HSPs)
scaffold0015 (335-488)||(200967-201122)
scaffold0015 (405-480)||(200940-201018)
[»] scaffold0137 (2 HSPs)
scaffold0137 (397-488)||(8251-8344)
scaffold0137 (329-418)||(8228-8316)
[»] scaffold0009 (1 HSPs)
scaffold0009 (402-488)||(39195-39282)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 38029986 - 38029517
Alignment:
Q  19 attgggtcatgaggcgattgggtgagtgagtccatgcattttactaatttgtatattgtgttcatttattgaaaatatttctcatttcctaataattagg 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38029986 attgggtcatgaggcaattgggtgagtgagtccatgcattttactaatttgtatattgtgttcatttattgaaaatatttctcatttcctaataattagg 38029887  T
Q  119 taaaggaaggcagtacatgtttatcactacctcgtttgtgtggtcatacacttcacgcatgcacgtagttaacaatttgaagtcttcaaatcaagattta 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38029886 taaaggaaggaagtacatgtttatcactacctcgtttgtgtggtcatacacttcacgcatgcacatagttaacaatttgaagtcttcaaatcaagattta 38029787  T
Q  219 aaaaactctaa--nnnnnnnnnnnnnnnnnggtcaatttgaagttgcattttgtgtctcacattgccaaagttcttaggtctgcatcattatatgaatga 316  Q
    |||||||||||                   ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||    
T  38029786 aaaaactctaattttttaacttttttttttggtcaatttgaagttgcattttgtgtctcacattggcaaagatcttaggtctgcatcat--tatgaatga 38029689  T
Q  317 gaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggac 416  Q
    ||||||  |||||||||| ||| |||||||||||||||||| |||| |||||| |||||||||||||||||||||||  | ||||||||||||||| |||    
T  38029688 gaaatgtcagcgacacacattttaacacactctttttaatgagttagaattcatatgaaacccacccaatttatatgagatccacatgatttggtgagac 38029589  T
Q  417 ccatgtgaattttaaccaatcaaaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||  | ||||||||||    
T  38029588 ccatgtgaattttaaccaatcaaaagtgtgttggaaaatgtgtgttagaatgtgtgtttctctcattcctct 38029517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 331 - 442
Target Start/End: Original strand, 3907661 - 3907770
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttta 430  Q
    |||||||||||||||||||||   || |||||||||||| |||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  3907661 acacttttcaacacactctttg--attggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatgtgaatttta 3907758  T
Q  431 accaatcaaaaa 442  Q
    ||||||||||||    
T  3907759 accaatcaaaaa 3907770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 42420153 - 42419991
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||| |||||||||||||||| ||| || |||||||| ||| |||| | ||| | ||||||||||| | |||||||||||||||||||||| ||   |||    
T  42420153 acacgcttttcaacacactctatttgattggttaaaactcacatgagatccatcaaatttatatgggatccacatgatttggtgggacccacgtatgttt 42420054  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||| |||   ||||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  42420053 taaccaattaaagagaatgtgttgaaaaatgtgtgttagaatgagtgttgttagcattcctct 42419991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 440
Target Start/End: Original strand, 22399776 - 22399884
Alignment:
Q  332 cacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaa 431  Q
    |||||||||||||||||||||| || || ||||||||| |||| ||||||| |||| |||||  ||||| ||||||| || |||| ||||||||||||||    
T  22399776 cacttttcaacacactctttttgattggataaaattcacatgagacccaccaaattcatatgagacccagatgatttagtaggactcatgtgaattttaa 22399875  T
Q  432 ccaatcaaa 440  Q
    |||||||||    
T  22399876 ccaatcaaa 22399884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 440
Target Start/End: Original strand, 25545223 - 25545332
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| |||||||||||||||||   || |||||||||||| |||| ||||||  ||||||||||| ||| ||||||||||||||||| || ||||||||    
T  25545223 acacatttttcaacacactctttg--attggttaaaattcacatgagacccactaaatttatatgggaccgacatgatttggtgggactcacgtgaattt 25545320  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  25545321 taaccaatcaaa 25545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 27195262 - 27195366
Alignment:
Q  336 tttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaa 435  Q
    ||||||||||||||||||||| | |||||||||| ||| |  ||||| |||||||||||  || ||||||||| ||||||| |||||||||||||| |||    
T  27195262 tttcaacacactctttttaattgattaaaattcacatggattccaccaaatttatatgggtccgacatgattttgtgggactcatgtgaattttaatcaa 27195361  T
Q  436 tcaaa 440  Q
    |||||    
T  27195362 tcaaa 27195366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 3907714 - 3907630
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||| || |||| ||||    
T  3907714 atttggtgggtcccatgtgaattttaaccaatcaaagagtgtgttgaaaagtgtttgttagaatgtgtgttgctagcatttctct 3907630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 360 - 475
Target Start/End: Original strand, 36059241 - 36059359
Alignment:
Q  360 ttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca---aaaatgtgttgaaaagtg 456  Q
    |||| ||||| |||| ||||| | ||||||||||  |||||||||||||| ||||| |||||| |||||||||||||||   ||| ||||||| |||||     
T  36059241 ttaagattcacatgagacccatcaaatttatatgagacccacatgatttgatgggatccatgtaaattttaaccaatcaaataaagtgtgttggaaagta 36059340  T
Q  457 tgtgttacaatgtgtgttg 475  Q
    ||||||| |||||||||||    
T  36059341 tgtgttagaatgtgtgttg 36059359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 31273046 - 31273153
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    |||| |||| || ||||||||| |||||||||||| |||| | ||||| ||||||||| ||| ||||||||||||||  || |||||| ||||||||| |    
T  31273046 tttttaacatacactttttaatcggttaaaattcacatgagatccaccaaatttatatagaatccacatgatttggtaagatccatgtaaattttaacaa 31273145  T
Q  435 atcaaaaa 442  Q
    ||||||||    
T  31273146 atcaaaaa 31273153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 41169526 - 41169415
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||| ||| ||  ||||||||||| |||  | ||||| ||||||||||| || | ||||||||||||| | ||||||||||||    
T  41169526 acacatttttcaacacactctctttgatccgttaaaattcacatgtgatccaccaaatttatatgggactcgcatgatttggtggaatccatgtgaattt 41169427  T
Q  429 taaccaatcaaa 440  Q
     |||||||||||    
T  41169426 caaccaatcaaa 41169415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 4190197 - 4190084
Alignment:
Q  329 acacacttttcaacacac--tctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaat 426  Q
    ||||||||||||||||||  ||| ||| || |||||||||||| |||  ||||||| |||| | || | |||||| | ||||| ||||| ||||||||||    
T  4190197 acacacttttcaacacacggtctctttgataggttaaaattcacatgggacccaccaaattcacataggacccacgtaatttgttgggatccatgtgaat 4190098  T
Q  427 tttaaccaatcaaa 440  Q
    ||||||||||||||    
T  4190097 tttaaccaatcaaa 4190084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 17474862 - 17474938
Alignment:
Q  415 acccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||||| |||||||| |   ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  17474862 acccatgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtatgttgttagcattcctct 17474938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 486
Target Start/End: Complemental strand, 22399830 - 22399746
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcct 486  Q
    |||||||||| | ||||||||||||| |||||||||||   |||||||||||||| || ||| ||||||||||| || |||||||    
T  22399830 atttggtgggtctcatgtgaattttatccaatcaaaaagagtgtgttgaaaagtgagtattagaatgtgtgttgctagcattcct 22399746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 3771224 - 3771280
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||||||  ||| ||||||||||||| ||| ||||||||||||||||||||||    
T  3771224 aatttatatgggtcccgcatgatttggtggaaccaatgtgaattttaaccaatcaaa 3771280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 442
Target Start/End: Complemental strand, 7721453 - 7721346
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    |||| |||||||||| |||||| ||||| |||||| ||   ||||||| ||||||||    |||||||| |||| || ||||||||||||| |||||||     
T  7721453 tttttaacacactctctttaattggttataattcacataggacccaccaaatttatacaagacccacataatttagtaggacccatgtgaactttaaccc 7721354  T
Q  435 atcaaaaa 442  Q
    ||||||||    
T  7721353 atcaaaaa 7721346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 25545278 - 25545211
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgt 471  Q
    |||| ||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||    
T  25545278 atttagtgggtctcatgtgaattttaaccaatcaaagagtgtgttgaaaaatgtgtgttaaaatgtgt 25545211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 36005022 - 36005125
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||| ||| ||||||| |||||  | |||||||||| |||  | ||||| ||||||||||| | |||| |||||  ||| |||||||||||||||    
T  36005022 acacactttgcaatacactctctttaagtgattaaaattcatatgggatccaccaaatttatatgggatccacgtgattcagtgagacccatgtgaattt 36005121  T
Q  429 taac 432  Q
    ||||    
T  36005122 taac 36005125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 488
Target Start/End: Original strand, 32309658 - 32309762
Alignment:
Q  387 ttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    |||||||| || |||||||||||||||||   |||| ||||||||| |||||||   |||| ||||||||||||||||||  |||| | |||||| | ||    
T  32309658 ttatatgggactcacatgatttggtgggattaatgtaaattttaacaaatcaaagagaatgcgttgaaaagtgtgtgttaggatgtatattgttagcgtt 32309757  T
Q  484 cctct 488  Q
    |||||    
T  32309758 cctct 32309762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 41106466 - 41106516
Alignment:
Q  386 tttatatggaacccacatgatttggtgggacccatgtgaattttaaccaat 436  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||||||||||    
T  41106466 tttatatgggacccacataatttggtgcgaccgatgtgaattttaaccaat 41106516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 35244906 - 35244865
Alignment:
Q  399 cacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  35244906 cacatgatatggtgggatccatgtgaattttaaccaatcaaa 35244865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 40530120 - 40530010
Alignment:
Q  316 agaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggga 415  Q
    |||||||||||| ||||| |||| |||||||||  ||||||  ||||||||||| | || | ||||  |||||||||   ||||||||||||||||| ||    
T  40530120 agaaatgctagcaacacattttttaacacactc--tttaatttgttaaaattcacaggagatccactaaatttatattagacccacatgatttggtgtga 40530023  T
Q  416 cccatgtgaattt 428  Q
    | ||||| |||||    
T  40530022 ctcatgtaaattt 40530010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 488
Target Start/End: Complemental strand, 19332125 - 19332020
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatc 480  Q
    ||||||||||| |||||||||||||||| ||||||  ||||| ||||||||||||||   ||||||||  |||   ||||||| ||||||||||| |  |    
T  19332125 aatttatatgggacccacatgatttggttggaccc-ggtgaa-tttaaccaatcaaagagaatgtgttcgaaaacatgtgttaaaatgtgtgttgctggc 19332028  T
Q  481 attcctct 488  Q
    ||||||||    
T  19332027 attcctct 19332020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 475
Target Start/End: Original strand, 40927687 - 40927758
Alignment:
Q  407 ttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||| |||||||||||||| ||||||||||   | | ||||||||| | ||||||| |||||||||||    
T  40927687 ttggtgggtcccatgtgaattttgaccaatcaaagatagtttgttgaaaaatttgtgttataatgtgtgttg 40927758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 488
Target Start/End: Complemental strand, 4158127 - 4158053
Alignment:
Q  417 ccatgtgaattttaaccaatca---aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||| |||| ||||   ||||| | ||||||| ||||||||| |||||||||| ||| |||||||||    
T  4158127 ccatgtgaatttcaaccgatcaaagaaaatatattgaaaattgtgtgttaaaatgtgtgttcttagcattcctct 4158053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 28907415 - 28907361
Alignment:
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgt 469  Q
    |||||||||||||||| ||||||   ||||||||||||| ||||||||| |||||    
T  28907415 catgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 28907361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 28943810 - 28943756
Alignment:
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgt 469  Q
    |||||||||||||||| ||||||   ||||||||||||| ||||||||| |||||    
T  28943810 catgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 28943756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 315 - 486
Target Start/End: Original strand, 42094196 - 42094365
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggg 414  Q
    ||||||||||||| |||||| ||| |||||||||| |||    |||||||||||| |||  ||||||| ||||||||||| |||||||||||||||||||    
T  42094196 gagaaatgctagcaacacacattttaacacactctcttt----ggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtggg 42094291  T
Q  415 acccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcct 486  Q
    | |||||||||||||||||||||||| |   ||||||||||||||||||||| ||||||||||| || |||||||    
T  42094292 a-ccatgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcct 42094365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 329 - 488
Target Start/End: Original strand, 25666801 - 25666963
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||| ||| || | |||||||||| |||| ||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  25666801 acacatttttcaacacactctatttgattgattaaaattcacatgagacccaccaaatttatatggaacctacatgatttggtgggatccatgtggattt 25666900  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||  ||||||   | ||||||||||| ||| ||||| ||||||||||| || |||| ||||    
T  25666901 taacacatcaaagagagtgtgttgaaaattgtatgttaaaatgtgtgttgctagcatttctct 25666963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 1469748 - 1469855
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||||||| |||||| |||||||||||| ||| || ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  1469748 ttttcaacacactctatttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgattttgtgggatccatgtgaattttaacca 1469847  T
Q  435 atcaaaaa 442  Q
    || |||||    
T  1469848 ataaaaaa 1469855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 42029478 - 42029342
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||| ||||| || |||||||||||| |||| ||||||| |||||||||||   || ||||||||||| |||||||| |||||||    
T  42029478 acacacttttcaacacacttttttttattggttaaaattcacatgagacccaccaaatttatatggggtccgcatgatttggtaggacccatatgaattt 42029379  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgtt 462  Q
    |||| |||||||   | ||||||||||| ||||||||    
T  42029378 taacaaatcaaatacagtgtgttgaaaaatgtgtgtt 42029342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 37810153 - 37810260
Alignment:
Q  333 acttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    ||||||||||||||||| ||| || ||||| |||||| |||  ||||||| ||||||||||| |||||  | ||||||||||||||||||||||||||||    
T  37810153 acttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaattttaac 37810252  T
Q  433 caatcaaa 440  Q
    ||||||||    
T  37810253 caatcaaa 37810260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 358 - 487
Target Start/End: Original strand, 3466419 - 3466551
Alignment:
Q  358 ggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaag 454  Q
    |||||||||||| |||| ||||||| |||| |||||| ||||||| ||||| |||| ||||||||||||||||||||||||||   | | ||||  ||||    
T  3466419 ggttaaaattcacatgagacccaccaaattcatatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagagactatgtttgaaag 3466518  T
Q  455 tgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    ||||||||| ||||||||||| || ||||||||    
T  3466519 tgtgtgttaaaatgtgtgttgctagcattcctc 3466551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 33069170 - 33069283
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||| | ||| || |||||||||||| || | ||||||| | ||||||||| |||||||| |||| |||||||||| |||| |||    
T  33069170 acacacttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacataatttagtgggacccaagtgatttt 33069269  T
Q  429 taaccaatcaaaaa 442  Q
    ||||||||||||||    
T  33069270 taaccaatcaaaaa 33069283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 440
Target Start/End: Complemental strand, 42251319 - 42251188
Alignment:
Q  311 gaatgagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgattt 408  Q
    ||||||||||||||||| ||||||  ||||||||||||||| ||| || | |||||||||| |||  | ||||| ||||||||| |  ||||||| ||||    
T  42251319 gaatgagaaatgctagcaacacacacttttcaacacactctctttgattgattaaaattcacatgggatccaccaaatttatataggtcccacataattt 42251220  T
Q  409 ggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||||||||| ||||||||||| ||||||    
T  42251219 ggtgggacccatgcgaattttaaccgatcaaa 42251188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 488
Target Start/End: Complemental strand, 18719882 - 18719707
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacac--tctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    ||||||||||||| |||||| ||  |||||||  ||| ||| || ||||||| || | |||| ||||| | ||||||||||| |||||||||||||||||    
T  18719882 gagaaatgctagctacacacattctaacacacactctctttgattggttaaattt-acatgagacccatcaaatttatatgggacccacatgatttggtg 18719784  T
Q  413 ggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    | || | |||||||||||||||||||||||   |||||||||||   ||||||| ||||||||||| || |||||||||    
T  18719783 gaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaa--atgtgttagaatgtgtgttgctagcattcctct 18719707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 41496062 - 41496175
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||| ||||| | ||| || |||||||||||| || ||| | ||| ||||||||| |||||||| |||||| ||| |||||||||||||||    
T  41496062 acacacttttcaatacactatctttgattggttaaaattcacataaaatctaccaaatttatatagaacccacttgatttagtgtgacccatgtgaattt 41496161  T
Q  429 taaccaatcaaaaa 442  Q
    ||| ||||||||||    
T  41496162 taatcaatcaaaaa 41496175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 462
Target Start/End: Complemental strand, 16209509 - 16209375
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttta 430  Q
    |||||||||||| || ||| ||| ||  ||||||||||| |||||||||||| ||||||||||| ||| |||  ||||||||| || |||||||||||||    
T  16209509 acacttttcaacgcattctctttgatcagttaaaattcaaatgaaacccaccaaatttatatgggaccgacaaaatttggtggaactcatgtgaatttta 16209410  T
Q  431 accaatcaaa---aatgtgttgaaaagtgtgtgtt 462  Q
    |||||| |||   | ||||||| ||||||||||||    
T  16209409 accaattaaagagagtgtgttggaaagtgtgtgtt 16209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 4237239 - 4237366
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggg 414  Q
    ||||||| ||||| | ||||||| |||||   ||||||| || |||||||||| | |||  | ||||| ||||| ||||| ||||||||||||||||||     
T  4237239 gagaaatactagcaatacactttccaacattttctttttgattggttaaaatttacatgggatccaccaaatttgtatgggacccacatgatttggtggt 4237338  T
Q  415 acccatgtgaattttaaccaatcaaaaa 442  Q
    |||||||||||||||||| |||||||||    
T  4237339 acccatgtgaattttaactaatcaaaaa 4237366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 462
Target Start/End: Original strand, 2683398 - 2683515
Alignment:
Q  348 ctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa---tg 444  Q
    ||||||||| | |||||||||| |||  ||||||| ||||||||  | |||||||||||||||||| |||||| | |||||||||||||||||||   ||    
T  2683398 ctttttaattgattaaaattcatatgggacccaccgaatttatactggacccacatgatttggtggaacccatataaattttaaccaatcaaaaagagtg 2683497  T
Q  445 tgttgaaaagtgtgtgtt 462  Q
    |  |||||||||||||||    
T  2683498 tcgtgaaaagtgtgtgtt 2683515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 459
Target Start/End: Original strand, 45300370 - 45300503
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| |||||||||||||| |||| || ||||||||| || |||  ||||||  ||| ||||||| ||||| || ||||| ||| | ||||||||||||    
T  45300370 acacatttttcaacacactccttttgattggttaaaatacatatgggacccactaaatctatatgggacccatataatttgatggaatccatgtgaattt 45300469  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgt 459  Q
    ||||||||||||||   ||| |||||||||||||    
T  45300470 taaccaatcaaaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 440
Target Start/End: Complemental strand, 44247664 - 44247563
Alignment:
Q  339 caacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca 438  Q
    ||||||||||| ||| || |||||||||||| |||  | ||| | ||||| ||||| |||||||| ||||||||| |||||||||||||| |||||||||    
T  44247664 caacacactctctttgattggttaaaattcacatgggatccatcaaatttgtatgggacccacataatttggtggaacccatgtgaatttcaaccaatca 44247565  T
Q  439 aa 440  Q
    ||    
T  44247564 aa 44247563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 440
Target Start/End: Complemental strand, 33171751 - 33171624
Alignment:
Q  315 gagaaatgctagcg--acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    |||||||||||||   ||||||||||||||||||||| ||| || ||||||| |||| |||   |||||| ||||||||  |  |  |||||||||||||    
T  33171751 gagaaatgctagcaccacacacttttcaacacactctctttgattggttaaatttcacatgggtcccaccaaatttatacaggtcttacatgatttggtg 33171652  T
Q  413 ggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||| |||||||||| ||||||||    
T  33171651 ggacccatatgaattttaaacaatcaaa 33171624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 9430273 - 9430162
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||| | ||| ||| || |||||||||||| ||||| |||| | ||||| ||||| |||||||||||||||| ||| | || | |||||    
T  9430273 acacacttttcaacatattctatttgattggttaaaattcacatgaaccccatcaaatttgtatgggacccacatgatttggtaggatctatataaattt 9430174  T
Q  429 taaccaatcaaa 440  Q
    |||| |||||||    
T  9430173 taactaatcaaa 9430162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 481
Target Start/End: Complemental strand, 40358780 - 40358631
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    |||||||||| || ||||| || |||||||||| | |||  ||||||| |||| | |||| || ||||| ||||| |||||| |||||||||||| ||      
T  40358780 ttttcaacaccctattttttataggttaaaatttacatgggacccaccaaattaacatgggactcacataatttgatgggactcatgtgaattttgacag 40358681  T
Q  435 atcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatca 481  Q
    ||||||   ||||| ||  ||||||||||||| |||||||||||||||||    
T  40358680 atcaaagcgaatgtattagaaagtgtgtgttaaaatgtgtgttgttatca 40358631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 429
Target Start/End: Original strand, 15194540 - 15194638
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttt 429  Q
    |||||||||| |||||||||||| || |||||||| ||| |||   | |||| ||| ||||||| ||| ||||||||||||||||| ||||||||||||    
T  15194540 acacttttcagcacactctttttgattggttaaaagtcacatgggtcgcaccaaatatatatgggaccgacatgatttggtgggacacatgtgaatttt 15194638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 483
Target Start/End: Complemental strand, 45300503 - 45300346
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacat-gatttggtgggacccatgtgaatt 427  Q
    ||||||||||||| ||||||||||| || |||||||||||| ||| |  ||| | |||| ||||||  |||| || ||||| ||||| ||||| || |||    
T  45300503 acacacttttcaatacactctttttgattggttaaaattcacatggattccatcaaatt-atatgggtcccatatagatttagtgggtcccatatgtatt 45300405  T
Q  428 ttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    |||||||||||||   | ||||||||||| ||||||||| ||  |||||||||| ||||    
T  45300404 ttaaccaatcaaaaggagtgtgttgaaaaatgtgtgttagaagatgtgttgttaacatt 45300346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 463
Target Start/End: Complemental strand, 1930801 - 1930669
Alignment:
Q  333 acttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    ||||||||||||||| ||||| || || ||||| | | | || ||| ||| ||||||||||| |||||||| ||||| ||| ||  ||||||||||||||    
T  1930801 acttttcaacacact-tttttgattggctaaaagttacacgagacctaccaaatttatatgggacccacataatttgatggaacatatgtgaattttaac 1930703  T
Q  433 caatcaaaaa---tgtgttgaaaagtgtgtgtta 463  Q
    ||||||||||   ||| ||||||| |||||||||    
T  1930702 caatcaaaaagagtgtcttgaaaaatgtgtgtta 1930669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 9430229 - 9430297
Alignment:
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||||| |||||||||| ||| ||||    
T  9430229 catgtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgttagaatgtgtgttattagcatt 9430297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 12779561 - 12779480
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa--aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||||| ||| ||||| || |||||||| || |||||    
T  12779561 atttggtggatcccatgtgaattttaaccaatcaaaagaatgtgttgaaaaatgtatgttagaaggtgtgttgctagcattc 12779480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 42029421 - 42029493
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    |||||||||| | ||||||||||||||||||| |||||   ||||||||||||||||||||| |||| |||||    
T  42029421 atttggtgggtctcatgtgaattttaaccaataaaaaaaagtgtgttgaaaagtgtgtgttagaatgcgtgtt 42029493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 6979076 - 6979148
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaa--atgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||| |||| || |||| ||||||||||||| ||||  |||||||||||||||||||||| |||||||||||    
T  6979076 atttgatgggtccaatgtaaattttaaccaataaaaaaaatgtgttgaaaagtgtgtgttaaaatgtgtgttg 6979148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 33171678 - 33171736
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtg 460  Q
    ||||||||||||||||||||| ||||||||||||||   | ||||||||||||||||||    
T  33171678 atttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgtgtg 33171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 475
Target Start/End: Complemental strand, 12703552 - 12703459
Alignment:
Q  385 atttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca---aaaatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||||||  || |||||||| ||| || ||||||||| |||||||||||   ||| ||| ||||||| ||||||||| |||||||||||    
T  12703552 atttatatggaattcagatgatttgatggaactcatgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgttaaaatgtgtgttg 12703459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 475
Target Start/End: Complemental strand, 15194595 - 15194522
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||| ||||||||||| |||||||||||||||||   |||| |||||||||| ||||| ||| |||||||    
T  15194595 atttggtgcgacccatgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgtatgttaaaatttgtgttg 15194522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 426
Target Start/End: Original strand, 29160844 - 29160941
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaat 426  Q
    ||||||||||||||||||  | |||||| | ||||||| || |||| || |||  ||||||||||  |||||||| |||||||||| ||||| |||||    
T  29160844 acacacttttcaacacaccatctttaattgattaaaatccacatgagactcactaaatttatatgagacccacataatttggtggggcccatatgaat 29160941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 30841073 - 30841032
Alignment:
Q  401 catgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  30841073 catgatttggtaggacccatatgaattttaaccaatcaaaaa 30841032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 469
Target Start/End: Complemental strand, 37810292 - 37810139
Alignment:
Q  319 aatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacc 417  Q
    ||||||||| ||||||||| || |||||||  ||| || |||||||||||| |||   |||||| |||| | ||||  |||| || | ||||||||| ||    
T  37810292 aatgctagcaacacactttccatcacactcactttgattggttaaaattcacatgggtcccaccaaatt-agatgggtcccatataaatttggtgggtcc 37810194  T
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgt 469  Q
    |||||||||| ||||||||||||   | ||||||||||||| || |||| |||||    
T  37810193 catgtgaattataaccaatcaaagagagtgtgttgaaaagtatgagttaaaatgt 37810139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 17383774 - 17383853
Alignment:
Q  340 aacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggaccca 419  Q
    |||||||||| ||| || |||||||| ||| |||   |||||| ||||| ||||| |||||||| |||||||||||||||    
T  17383774 aacacactctcttttattggttaaaagtcatatgggtcccaccaaatttctatgggacccacataatttggtgggaccca 17383853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 462
Target Start/End: Original strand, 36283540 - 36283619
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaat-caaaaatgtgttgaaaagtgtgtgtt 462  Q
    |||||||||||  ||||||||||||||| ||||| ||| ||||||||| ||||  ||||| || ||||||||| ||||||    
T  36283540 aatttatatgggtcccacatgatttggtaggacctatgcgaattttaatcaataaaaaaaagtattgaaaagtatgtgtt 36283619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 44487288 - 44487178
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||||| || ||||||||||| || |||||||||||| || |    |||| ||||||| |||  |  | ||||||||||| ||| |||||||||||    
T  44487288 acacactttttaatacactctttttgatcggttaaaattcacataagcttcaccaaatttatttggg-catagatgatttggtgagactcatgtgaattt 44487190  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  44487189 taaccaatcaaa 44487178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 35715053 - 35715125
Alignment:
Q  406 tttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||| ||||||| |||| |||||||||||||||||   | ||| ||||||||||||| ||| |||||||||||    
T  35715053 tttgatgggacctatgtaaattttaaccaatcaaagagagtgtattgaaaagtgtgtcttaaaatgtgtgttg 35715125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 42251242 - 42251302
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgtt 462  Q
    |||||||||  |||||||||||||||| ||||||||   | ||||||||||||||||||||    
T  42251242 atttggtggatcccatgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgtt 42251302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 16209378 - 16209423
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatga 374  Q
    ||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  16209378 acacactttccaacacactctctttaattggttaaaattcacatga 16209423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 33069213 - 33069154
Alignment:
Q  419 atgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||||||||| |||||| |   |||||||||||||||||| || |||||||||||    
T  33069213 atgtgaattttaaccgatcaaagaaagtgtgttgaaaagtgtgtgatagaatgtgtgttg 33069154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 41496105 - 41496038
Alignment:
Q  419 atgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    ||||||||||||||||||||||   | ||| ||||||||||||||||| ||| | |||||||| ||||    
T  41496105 atgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatatatgttgttaccatt 41496038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 6979037 - 6978997
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaat 436  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  6979037 acccacatgatttgataggactcatgtgaattttaaccaat 6978997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 12779786 - 12779746
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattca 369  Q
    ||||||||  |||||||||||||||||| ||||||||||||    
T  12779786 acacacttaccaacacactctttttaattggttaaaattca 12779746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 18719734 - 18719774
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattca 369  Q
    ||||| ||||||||||||||||||| || ||||||||||||    
T  18719734 acacatttttcaacacactctttttgattggttaaaattca 18719774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 329 - 485
Target Start/End: Original strand, 21433876 - 21434035
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||| ||| || |||||||||||| |||| ||||||| ||||||||||  |||||||||||||||||||| ||||||||||||    
T  21433876 acacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtgggatccatgtgaattt 21433975  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcc 485  Q
    |||||||||||  |   ||||||||||||||| ||||| ||||||||||| || ||||||    
T  21433976 taaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgttgctaccattcc 21434035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 360 - 477
Target Start/End: Complemental strand, 33414108 - 33413988
Alignment:
Q  360 ttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtg 456  Q
    |||||||||| |||  ||||||| ||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||   | ||||||||||||||    
T  33414108 ttaaaattcatatgggacccaccaaatttatataggacccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtg 33414009  T
Q  457 tgtgttacaatgtgtgttgtt 477  Q
    ||||||||||||||| |||||    
T  33414008 tgtgttacaatgtgttttgtt 33413988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 314 - 483
Target Start/End: Complemental strand, 9024063 - 9023889
Alignment:
Q  314 tgagaaatgctagcga--cacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggt 411  Q
    |||||||||||||| |  |||||||||||||||| ||| ||| ||  ||||||||| | |||  |||||| |||||||||||| || ||||||||||| |    
T  9024063 tgagaaatgctagcaatacacacttttcaacacattctctttgatttgttaaaatttacatgggacccactcaatttatatgggactcacatgatttgtt 9023964  T
Q  412 gggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    ||||| ||||||||||||| |||||||||||   |||||| |||||||| ||||| ||||||| |||||| ||||    
T  9023963 gggactcatgtgaattttacccaatcaaaaaacgtgtgttaaaaagtgtatgttaaaatgtgtattgttaacatt 9023889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 487
Target Start/End: Complemental strand, 52375069 - 52374892
Alignment:
Q  315 gagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    |||||||| |||| ||||||  ||||||| ||||||||||| || |||||||||||| ||   | ||| | |||||||| || |||||||| ||||||||    
T  52375069 gagaaatgttagcaacacacatttttcaatacactctttttgattggttaaaattcacatttgatccatcaaatttatacgggacccacataatttggtg 52374970  T
Q  413 ggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
     || ||||||||||||||| | |||||| |   ||||||||||||||||||||| |||||||||||||| ||||||||    
T  52374969 agatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctc 52374892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 2324847 - 2324732
Alignment:
Q  376 acccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtg 472  Q
    ||||||| ||||||||||| |||||||||||||||||  || |||||||||||||||||||||||   | | | |||||||||||| |||| ||||||||    
T  2324847 acccaccaaatttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtgcgttaaaatgtgtg 2324748  T
Q  473 ttgttatcattcctct 488  Q
    ||||||||||||||||    
T  2324747 ttgttatcattcctct 2324732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 474
Target Start/End: Complemental strand, 15134702 - 15134555
Alignment:
Q  330 cacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttt 429  Q
    |||||||||||||||||| | | | || |||||||||||| |||  || |||| ||||||||||| ||||| ||||||| || |||||||||||||||||    
T  15134702 cacacttttcaacacactgtctgtgattggttaaaattcacatgggactcaccaaatttatatgggacccaaatgatttagtcggacccatgtgaatttt 15134603  T
Q  430 aaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    ||||||| |||   ||||||||||||| ||||||||| ||| ||||||    
T  15134602 aaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgtt 15134555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 487
Target Start/End: Original strand, 2247583 - 2247741
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||||| |||||| | |||||||||| | || | ||||  ||||||||||  |||||||||||||||||||| |||||| |||||    
T  2247583 acacacttttcaacacactctctttaattgattaaaattcacacgagatccaca-aatttatatgcgacccacatgatttggtgggatccatgttaattt 2247681  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    ||||||||||||   | || |||| |||  |||||||| |||||||||||||| ||||||||    
T  2247682 taaccaatcaaagagagtgggttggaaa--gtgtgttaaaatgtgtgttgttagcattcctc 2247741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 16458055 - 16457945
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||||| ||| || | ||||| ||||  ||| ||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  16458055 acacacttttcaacacactctctttgatcgattaaa-ttcatgtgagacccaccaaatttatatgggacccacatgatttgatgggatccatgtgaattt 16457957  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  16457956 taaccaatcaaa 16457945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 453
Target Start/End: Complemental strand, 38036385 - 38036246
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggg 414  Q
    ||||||||||||| |||||| ||| |||||| | | ||| ||  ||||||||||| |||| ||||| | |||||||||||||||||||| |||||  |||    
T  38036385 gagaaatgctagcaacacacattttaacacattgtctttgatttgttaaaattcacatgagacccaacaaatttatatggaacccacataatttg--ggg 38036288  T
Q  415 acccatgtgaattttaaccaatca---aaaatgtgttgaaaa 453  Q
    || |||||||||||||||||||||   |||||||||||||||    
T  38036287 actcatgtgaattttaaccaatcaaagaaaatgtgttgaaaa 38036246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 487
Target Start/End: Complemental strand, 31758817 - 31758664
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||| ||| ||| || | |||||||||  |||| ||||||| |||||| |||  ||||||||||||||||||  |  ||||||||||||||||    
T  31758817 ttttcaacacattctctttgattgattaaaattcttatgagacccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaacca 31758718  T
Q  435 atcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    ||||||   |||||||||||||  |||||||| |||||||||| ||| ||||||||    
T  31758717 atcaaatagaatgtgttgaaaa--gtgtgttaaaatgtgtgtttttaccattcctc 31758664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 475
Target Start/End: Original strand, 45654018 - 45654163
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttta 430  Q
    |||||||||||||||||||||| | ||| |  ||||| | |||| ||| | | ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  45654018 acacttttcaacacactcttttgattggtt--aaatttatatgagacctatcaaatttatatgggacccacatgatttgatgggatccatgtgaatttta 45654115  T
Q  431 accaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||||||   |||||| |||| | ||||||| ||||| |||||    
T  45654116 accaatcaaaaaaagtgtgttaaaaaatatgtgttagaatgtatgttg 45654163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 331 - 462
Target Start/End: Complemental strand, 3688705 - 3688570
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaat-ttatatggaacccacatgatttggtgggacccatgtgaatttt 429  Q
    ||||||| ||||||||| | ||| || |||||||||||| |||  ||||| | ||  |||||||| ||||||||||||||||| ||||||||||||||||    
T  3688705 acactttccaacacactttctttgattggttaaaattcacatgtgacccatctaaaattatatgggacccacatgatttggtgagacccatgtgaatttt 3688606  T
Q  430 aaccaatca---aaaatgtgttgaaaagtgtgtgtt 462  Q
    ||| |||||   ||||||||||||||| ||||||||    
T  3688605 aactaatcaaagaaaatgtgttgaaaaatgtgtgtt 3688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 335 - 484
Target Start/End: Complemental strand, 32286361 - 32286212
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||||||||||| || |||||||||||| ||| | || ||| ||||||||| || || ||||||||||||||||| ||||||||||||||  |    
T  32286361 ttttcaacacactcttttttattggttaaaattcacatggatccaaccaaatttatattgatcc-acatgatttggtgggactcatgtgaattttaaaga 32286263  T
Q  435 atcaa-aaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    ||||| ||  |||||||||| ||| | ||| ||| | |||||||| |||||    
T  32286262 atcaataagagtgttgaaaaatgtatcttaaaatatttgttgttagcattc 32286212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 440
Target Start/End: Complemental strand, 19382438 - 19382322
Alignment:
Q  319 aatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggaccc 418  Q
    ||||||| | ||| |||||| |||||||||||||| || |||||||||| | |||   ||| || ||||||||     ||||||||||||||||||| ||    
T  19382438 aatgctaactacagactttttaacacactctttttgattggttaaaatttatatgggtcccgccaaatttata-----cccacatgatttggtgggatcc 19382344  T
Q  419 atgtgaattttaaccaatcaaa 440  Q
    ||||||||||||||||||||||    
T  19382343 atgtgaattttaaccaatcaaa 19382322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 993291 - 993219
Alignment:
Q  391 atggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgtt 462  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||  ||||||||    
T  993291 atgggacccacatgatttggtgggactcatgtgaattttaaccaatcaaagagtgtgttgaaagatgtgtgtt 993219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 487
Target Start/End: Original strand, 15134646 - 15134731
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    |||||||| | ||||||||||||||||||||||| | |   |||||||||||||||| |||| |||||||||||||| ||||||||    
T  15134646 atttggtgagtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgtgttgttagcattcctc 15134731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 477
Target Start/End: Complemental strand, 16577313 - 16577238
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgtt 477  Q
    ||||||||||||| |||| ||||||||| |||||||   ||||||||||||| ||||||||| |||||||||||||    
T  16577313 atttggtgggacctatgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgttagaatgtgtgttgtt 16577238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 53128052 - 53127987
Alignment:
Q  375 aacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||| ||||||||| | |||||| |||| ||||||||||||||||| |||||||||||||||    
T  53128052 aacccaccaaatttatataggacccacttgatatggtgggacccatgtgagttttaaccaatcaaa 53127987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 17181269 - 17181333
Alignment:
Q  376 acccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||| ||||||||||  |||||| ||||||||||||||| |||||||||||||| |||||||    
T  17181269 acccaccaaatttatatgagacccacgtgatttggtgggacctatgtgaattttaactaatcaaa 17181333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 21433933 - 21433861
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    |||||||||| | |||||||||||||||||||||||   | ||||||||||| ||||||||| ||||||||||    
T  21433933 atttggtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtgtt 21433861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 471
Target Start/End: Complemental strand, 51578110 - 51577995
Alignment:
Q  358 ggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaag 454  Q
    |||||||||||| ||| | |||||| ||||| ||||  ||| ||| || |||||||||||||||||||||||||| |||||||   |||||||||| |||    
T  51578110 ggttaaaattcacatgga-cccaccaaatttgtatgagaccgacacgaattggtgggacccatgtgaattttaacaaatcaaaatgaatgtgttgataag 51578012  T
Q  455 tgtgtgttacaatgtgt 471  Q
    | | ||||| |||||||    
T  51578011 tatatgttagaatgtgt 51577995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 1338512 - 1338420
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||||||  |||| |  ||||||||||| |||||||| ||||||||||||||| |  |||||||||| ||||||||| ||| |||||||    
T  1338512 aatttatatgggtcccatacaatttggtgggatccatgtgatttttaaccaatcaaagagagtgttgaaaaatgtgtgttaaaatatgtgttg 1338420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 382
Target Start/End: Original strand, 19382284 - 19382353
Alignment:
Q  313 atgagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacc 382  Q
    ||||| ||||||||| ||||||||| ||||||||||| ||| || |||||||||||| ||| | ||||||    
T  19382284 atgagtaatgctagcaacacactttccaacacactctatttgattggttaaaattcacatggatcccacc 19382353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 25592254 - 25592306
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaat 436  Q
    ||||||||| | |||||||||||||||||||||| |  |||||||||||||||    
T  25592254 aatttatataggacccacatgatttggtgggaccaaaatgaattttaaccaat 25592306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 488
Target Start/End: Original strand, 16577327 - 16577416
Alignment:
Q  402 atgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||| ||| |||||||||| |||||||||||||||   ||| | || |||||||| ||||| ||||||| |||||| | |||||||    
T  16577327 atgatttgttggaacccatgtgagttttaaccaatcaaatagaatatattaaaaagtgtatgttaaaatgtgtattgttagcgttcctct 16577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 478
Target Start/End: Original strand, 33414006 - 33414158
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacccatgtgaatt 427  Q
    ||||||||||||||||||||| ||| || |||||||||||| ||| | |||||| |||  |  |||  || | || | ||||||||| ||||| ||||||    
T  33414006 acacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatc-acgtgggtcctatataaatttggtgggtcccatatgaatt 33414104  T
Q  428 ttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgtta 478  Q
    |||| |||||||| |   |||||| || |||||||| || ||||||||||||||    
T  33414105 ttaatcaatcaaataagatgtgtttaatagtgtgtgctataatgtgtgttgtta 33414158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 3688663 - 3688731
Alignment:
Q  418 catgtgaattttaaccaatca---aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    |||||||||||||||||||||   ||| ||||||| ||||||| | ||| |||||||||||||| ||||    
T  3688663 catgtgaattttaaccaatcaaagaaagtgtgttggaaagtgtatattaaaatgtgtgttgttagcatt 3688731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 7403175 - 7403235
Alignment:
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||||||||||||||||||   | ||||||||| ||||||||||| ||| |||||||    
T  7403175 catgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaatatgtgttg 7403235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 16458039 - 16458084
Alignment:
Q  443 tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||||||||| ||||||||||| || |||| ||||    
T  16458039 tgtgttgaaaagtgtgtgttagaatgtgtgttgctagcatttctct 16458084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 17508768 - 17508880
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||||||| ||   |||||||| | |||||   |||| |||||| |||||  | || |||||||||||||| |||||||  ||    
T  17508768 acacatttttcaacacactctttttgatttattaaaatt-acatgaatttcaccaaatttacatggattctacctgatttggtgggactcatgtgatatt 17508866  T
Q  429 taaccaatcaaaaa 442  Q
    ||| ||||||||||    
T  17508867 taatcaatcaaaaa 17508880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 48791235 - 48791288
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacc 382  Q
    ||||||||| ||||||||||| |||||| |||| ||||||| ||| ||||||||    
T  48791235 acacactttccaacacactctctttaatcggttgaaattcatatggaacccacc 48791288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 434
Target Start/End: Original strand, 34119692 - 34119728
Alignment:
Q  398 ccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||| || ||||||||||||||||||||||    
T  34119692 ccacatgatttagtaggacccatgtgaattttaacca 34119728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 34397468 - 34397424
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||||||||| ||  |||||||||||||||||| ||||||||    
T  34397468 acccacatgattttgtacgacccatgtgaattttaatcaatcaaa 34397424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 42516515 - 42516597
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||| ||| ||| |||  |||||||||| ||||||  |||   ||||||||||||||||||||||| ||| |||||||    
T  42516515 acccacatggtttagtgtgacttatgtgaatttaaaccaaataaagagaatgtgttgaaaagtgtgtgttaaaatatgtgttg 42516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 335 - 463
Target Start/End: Original strand, 34504386 - 34504517
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||||||||||| || |||||||||||| ||| ||| |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  34504386 ttttcaacacactctttttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatgatttggtgtgacccatgcgaattttaacca 34504485  T
Q  435 atcaaaaa---tgtgttgaaaagtgtgtgtta 463  Q
    ||||||||   ||||||||||||||| |||||    
T  34504486 atcaaaaaaagtgtgttgaaaagtgtatgtta 34504517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 329 - 488
Target Start/End: Original strand, 8402483 - 8402641
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||||||||||||||||||   || | |||||||||| |||   |||| | |||| ||||||  |||||||||||||||||| |||||| || |||    
T  8402483 acacacttttcaacacactctttg--attgtttaaaattcacatgggtcccaacaaattaatatgggtcccacatgatttggtggggcccatgagagttt 8402580  T
Q  429 taaccaatcaaaaa-tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||| || |||||||||    
T  8402581 taaccaatcaaatagtgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcctct 8402641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 463
Target Start/End: Original strand, 40175896 - 40176034
Alignment:
Q  329 acacacttttcaacacactcttttta-atgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatt 427  Q
    ||||||||||||||||||| |||||  || |||||||||||| |||  | ||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  40175896 acacacttttcaacacactttttttttattggttaaaattcacatgggatccaccaaatttatatgggacccacataatttggtgggacccatgtgaatt 40175995  T
Q  428 ttaaccaatcaaa---aatgtgttgaaaagtgtgtgtta 463  Q
    ||||||||| |||   | |||||| ||||||||||||||    
T  40175996 ttaaccaattaaaaggagtgtgttaaaaagtgtgtgtta 40176034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 484
Target Start/End: Original strand, 40694616 - 40694774
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||| ||||||| ||| ||| || |||||||||| | |||  ||||||| ||| ||||| | |||||||||||||||||||||||||||||||||    
T  40694616 acacattttacaacacaatctatttgattggttaaaattaacatgcgacccaccaaatctatataggacccacatgatttggtgggacccatgtgaattt 40694715  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    |||| ||| |||||   ||| ||||||||||||||||| || |||||||| ||| ||||    
T  40694716 taactaataaaaaagagtgtattgaaaagtgtgtgttaaaacgtgtgttgctataattc 40694774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 40696324 - 40696211
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||| ||||||| ||| ||| || |||||||||| | |||  ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  40696324 acacattttgcaacacaatctctttcattggttaaaattaacatgcgacccaccaaatctatatagaacccacatgatttggtgggacccatgtgaattt 40696225  T
Q  429 taaccaatcaaaaa 442  Q
    |||| |||||||||    
T  40696224 taactaatcaaaaa 40696211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 315 - 475
Target Start/End: Complemental strand, 42072808 - 42072649
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggg 414  Q
    ||||||| ||||| |||||| ||| |||||  ||||||| || |||||||||| | |||  ||||||| ||||||||||  ||||| |||||||||||||    
T  42072808 gagaaatactagcaacacacattttaacac--tcttttttattggttaaaatttacatgggacccaccaaatttatatgagacccatatgatttggtggg 42072711  T
Q  415 acccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||||||| |||||||||||||   | |||||||  |||||||||||| |||||| ||||    
T  42072710 acccatgtgaatgttaaccaatcaaagagagtgtgttg--aagtgtgtgttaaaatgtgcgttg 42072649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 315 - 439
Target Start/End: Original strand, 26018451 - 26018573
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggg 414  Q
    ||||||||||| | |||||  ||| ||||||||||  || || ||||||||||||   || ||||||| ||||||||||| |||||||| ||||| ||||    
T  26018451 gagaaatgctaacaacacatattttaacacactctcgttgattggttaaaattcac--gagacccaccaaatttatatgggacccacataatttgatggg 26018548  T
Q  415 acccatgtgaattttaaccaatcaa 439  Q
    |||||||||||||||||||||||||    
T  26018549 acccatgtgaattttaaccaatcaa 26018573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 35586539 - 35586429
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||| ||| |||||| | |||||||||| ||   ||||||| ||||||||||  || ||||||||||||||||| || |||||||||    
T  35586539 acacacttttcaacacattctctttaattgattaaaattcacataggacccaccaaatttatatgagactcacatgatttggtggga-ccgtgtgaattt 35586441  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  35586440 taaccaatcaaa 35586429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 27072951 - 27072838
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||| ||||||| || |||||||||| | ||   ||||||| ||||||||||| | ||||||||||||||| |||| |  |||||||    
T  27072951 acacacttttcaacacattctttttgattggttaaaatttacattggacccaccaaatttatatgggatccacatgatttggtgagacctacatgaattt 27072852  T
Q  429 taaccaatcaaaaa 442  Q
    |||||||| |||||    
T  27072851 taaccaataaaaaa 27072838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 460
Target Start/End: Complemental strand, 38835132 - 38835002
Alignment:
Q  335 ttttcaacaca--ctctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    |||||||||||  |||||||| || |||||||||||| ||  || | ||| ||||||||||| |||| |||||||||||| |||||||||||||||||      
T  38835132 ttttcaacacattctctttttgattggttaaaattcacatagaatctaccaaatttatatgggacccgcatgatttggtgagacccatgtgaattttagt 38835033  T
Q  433 caatcaaa---aatgtgttgaaaagtgtgtg 460  Q
    ||||||||   |||||||||||| |||||||    
T  38835032 caatcaaagagaatgtgttgaaatgtgtgtg 38835002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 463
Target Start/End: Original strand, 21124958 - 21125090
Alignment:
Q  333 acttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    ||||||| |||||||||||| | ||| |||||||||| ||| || ||| | ||||||||||| | |||||||||||| || ||||||||| ||||||||     
T  21124958 acttttcgacacactcttttgattgg-ttaaaattcatatggaatccatcaaatttatatgggatccacatgatttgatgagacccatgtaaattttaat 21125056  T
Q  433 caatcaaa---aatgtgttgaaaagtgtgtgtta 463  Q
    ||||||||   |||||||| |||||| |||||||    
T  21125057 caatcaaatagaatgtgttaaaaagtatgtgtta 21125090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 4994289 - 4994178
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| |||| ||||||||||||   || ||||||||||   |||| ||||||  ||||||||||| ||||||||||||||||||||| |||  ||||||    
T  4994289 acacaatttttaacacactctttg--attggttaaaatttgtatgagacccacaaaatttatatgggacccacatgatttggtgggactcataagaattt 4994192  T
Q  429 taaccaatcaaaaa 442  Q
    ||||||||||||||    
T  4994191 taaccaatcaaaaa 4994178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 475
Target Start/End: Complemental strand, 2288733 - 2288586
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttta 430  Q
    |||||||||||||  |||| ||| || |||||||||||| |||  | ||| | ||||||||||| |||||  ||||||||||  |||||||| |||||||    
T  2288733 acacttttcaacaatctctctttgattggttaaaattcacatgggatccatcaaatttatatgggacccatgtgatttggtgaaacccatgtaaatttta 2288634  T
Q  431 accaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||||   | ||||||  ||||||||||||| ||| |||||||    
T  2288633 accaatcaaagagagtgtgttcgaaagtgtgtgttagaatatgtgttg 2288586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 463
Target Start/End: Complemental strand, 20271146 - 20271007
Alignment:
Q  332 cacttttcaacacactctttttaatgggttaaaattcagatgaa-----acccacccaatttatatggaacccacatgatttggtgggacccatgtgaa- 425  Q
    |||||||||||||||||| ||| ||  ||||||||||| ||||      |||||   ||||||||||| |||||||||||||||||||| |||||||||     
T  20271146 cacttttcaacacactctctttgattagttaaaattcacatgatttgggacccataaaatttatatgggacccacatgatttggtgggatccatgtgaat 20271047  T
Q  426 -ttttaaccaatcaaa-aatgtgttgaaaagtgtgtgtta 463  Q
     ||||||||||||||| |  |||||||||| |||||||||    
T  20271046 tttttaaccaatcaaagagagtgttgaaaaatgtgtgtta 20271007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 463
Target Start/End: Complemental strand, 21057774 - 21057635
Alignment:
Q  332 cacttttcaacacactctttttaatgggttaaaattcagatgaa-----acccacccaatttatatggaacccacatgatttggtgggacccatgtgaa- 425  Q
    |||||||||||||||||| ||| ||  ||||||||||| ||||      |||||   ||||||||||| |||||||||||||||||||| |||||||||     
T  21057774 cacttttcaacacactctctttgattagttaaaattcacatgatttgggacccataaaatttatatgggacccacatgatttggtgggatccatgtgaat 21057675  T
Q  426 -ttttaaccaatcaaa-aatgtgttgaaaagtgtgtgtta 463  Q
     ||||||||||||||| |  |||||||||| |||||||||    
T  21057674 tttttaaccaatcaaagagagtgttgaaaaatgtgtgtta 21057635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 42209424 - 42209475
Alignment:
Q  389 atatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  42209424 atatggaacccacatgatatggtgggaaccatgtgaattttaaccaatcaaa 42209475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 38357643 - 38357544
Alignment:
Q  391 atggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    |||||||||||||||||||||||| | ||||||| ||| ||| |||||||   | ||||||| |||||||||| || ||||||||||| || ||||||||    
T  38357643 atggaacccacatgatttggtgggtctcatgtgagtttcaactaatcaaagagagtgtgttggaaagtgtgtgctagaatgtgtgttgctagcattcctc 38357544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 40176030 - 40175893
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacccatgtgaatt 427  Q
    |||||||||| ||||||||| ||||||| |||||||||||| |||   |||||| |||| || |||  |||| || | ||||||||  ||||||||||||    
T  40176030 acacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaatt-atgtgggtcccatataaatttggtggatcccatgtgaatt 40175932  T
Q  428 ttaaccaatcaaaaa----tgtgttgaaaagtgtgtgtt 462  Q
    ||||||||| |||||    ||||||||||||||||||||    
T  40175931 ttaaccaataaaaaaaaagtgtgttgaaaagtgtgtgtt 40175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 484
Target Start/End: Original strand, 40566514 - 40566617
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatc 480  Q
    |||||| ||||| ||  |||||||||||| ||| |||||||||||||||||||||||||    |||||||||| | ||||||| ||||||||||| || |    
T  40566514 aatttacatggatcctccatgatttggtgagactcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgtgttgctaac 40566613  T
Q  481 attc 484  Q
    ||||    
T  40566614 attc 40566617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 13260473 - 13260421
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaat 436  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  13260473 aatttatatgggacccacatgagttggtgggacccatgtgcattttaaccaat 13260421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 488
Target Start/End: Original strand, 17893390 - 17893481
Alignment:
Q  399 cacatgatttggtgggacccatgtgaattttaaccaatcaaaaatgt--gttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||||||||||| ||   |||||||| ||| ||||| ||  |||||||| ||||||||| ||||||||||||||||||| ||||    
T  17893390 cacatgatttggtgggacccgtgcacattttaactaataaaaaaagtatgttgaaaaatgtgtgttaaaatgtgtgttgttatcatttctct 17893481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 474
Target Start/End: Complemental strand, 30650083 - 30649938
Alignment:
Q  329 acacacttttcaacacactctttttaatgg-gttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatt 427  Q
    ||||||||||||||| | | |||| | ||| ||||||||||| |||  | ||||| |||||| |||| || || |  || |||||||| |||||||||||    
T  30650083 acacacttttcaacatatttttttgattggtgttaaaattcacatgggatccaccaaatttacatgggactcata--atatggtgggatccatgtgaatt 30649986  T
Q  428 ttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    ||||| ||||||| |||||||||||||||||| |||| |||| |||||    
T  30649985 ttaacaaatcaaagaatgtgttgaaaagtgtgagttaaaatgagtgtt 30649938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 27072894 - 27072967
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||||| || |||| |||||||||||||||||||   ||||||||||||||||||||| ||| |||||||    
T  27072894 atttggtgggtccaatgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgttaaaatatgtgttg 27072967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 488
Target Start/End: Original strand, 18998098 - 18998201
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa-tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcat 482  Q
    |||| |||||| ||||| |||||||| | |||||||| |||||||||||||  || | | ||||||||||| ||||||||| ||||||||| |||| |||    
T  18998098 aattcatatgggacccaaatgatttgataggacccatctgaattttaacca--cagagagtgtgttgaaaaatgtgtgttaaaatgtgtgtcgttagcat 18998195  T
Q  483 tcctct 488  Q
    ||||||    
T  18998196 tcctct 18998201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 35586482 - 35586568
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||| || ||||||||||||| |||| |||   ||||||||||||||||||||||| ||||| || ||||| |||| ||||    
T  35586482 atttggtgggtcctatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgtgttagaatgtatgatgttaacatttctct 35586568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 8402538 - 8402483
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgt 459  Q
    ||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||    
T  8402538 atttgttgggacccatgtgaattttaaacaatcaaagagtgtgttgaaaagtgtgt 8402483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 432
Target Start/End: Complemental strand, 2171133 - 2171031
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacccatgtgaatttt 429  Q
    |||| ||| ||||||||||||||||| |||||||||||   || | |||||| |||||||||||  || |||| | ||||||||||| ||||| ||||||    
T  2171133 acacattttaacacactctttttaattggttaaaattcgcttggaccccaccaaatttatatgggtccgacataattttggtgggacacatgtaaatttt 2171034  T
Q  430 aac 432  Q
    |||    
T  2171033 aac 2171031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 2478469 - 2478534
Alignment:
Q  377 cccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    |||||| || |||||||| || || ||||||||||||||||||||| |||||||||| || |||||    
T  2478469 cccaccaaaattatatgggacacagatgatttggtgggacccatgtaaattttaaccgataaaaaa 2478534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 30262769 - 30262874
Alignment:
Q  337 ttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaat 436  Q
    ||||||||| ||||||| || |||||||||| | ||||  |||||| ||||||||||| || || ||||| |||||| | | ||||||||||| | ||||    
T  30262769 ttcaacacattcttttttattggttaaaatttatatgagtcccaccaaatttatatggtactcaaatgatgtggtggaatctatgtgaattttgatcaat 30262868  T
Q  437 caaaaa 442  Q
     |||||    
T  30262869 aaaaaa 30262874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 36009901 - 36009987
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||   |||||||||||||||||| |||| |   ||||||| ||||||||||||| ||||| ||||| || |||||||||    
T  36009901 atttggtgggtgtcatgtgaattttaaccaaccaaagagagtgtgttggaaagtgtgtgttaaaatgtttgttgctagcattcctct 36009987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 20271105 - 20271178
Alignment:
Q  418 catgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||| ||||||| |   |||||||||||||| |||||| ||||||||||| || |||| ||||    
T  20271105 catgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctaacatttctct 20271178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 21057733 - 21057806
Alignment:
Q  418 catgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||| ||||||| |   |||||||||||||| |||||| ||||||||||| || |||| ||||    
T  21057733 catgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctaacatttctct 21057806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 30650025 - 30650093
Alignment:
Q  405 atttggtgggacccatgtgaattttaac--caatcaaaaa--tgtgttgaaaagtgtgtgttacaatgt 469  Q
    |||||||||  |||||||||||||||||  ||||||||||  | ||||||||||||||||||| |||||    
T  30650025 atttggtggatcccatgtgaattttaacaccaatcaaaaaaatatgttgaaaagtgtgtgttaaaatgt 30650093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 4994253 - 4994305
Alignment:
Q  424 aattttaaccaatcaaaaa-tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||||||||||| | |||||| |||| ||||||||| |||||||||||    
T  4994253 aattttaaccaatcaaagagtgtgttaaaaattgtgtgttaaaatgtgtgttg 4994305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 480
Target Start/End: Complemental strand, 9814135 - 9814039
Alignment:
Q  385 atttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatc 480  Q
    ||||||||| || |||||| |||| ||||||| | ||||||||||||| ||||||| |  |||||| ||| | | ||||| ||||||||||| ||||    
T  9814135 atttatatgaaatccacattatttagtgggacacgtgtgaattttaacaaatcaaagagagtgttggaaaatatatgttaaaatgtgtgttgctatc 9814039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 488
Target Start/End: Complemental strand, 23848319 - 23848240
Alignment:
Q  410 gtgggacccatgtgaattttaaccaatcaaaaat---gtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||| ||||| |||||||||| |||||||| ||   ||||||||||||||||  || |||||||||||||| |||| ||||    
T  23848319 gtgggtcccatatgaattttaatcaatcaaagatagtgtgttgaaaagtgtgt--taaaatgtgtgttgttagcatttctct 23848240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 23848302 - 23848346
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||| |||||| ||||||||||||||||||||||||  |||||||    
T  23848302 aattcatatgggacccacatgatttggtgggacccaaatgaattt 23848346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 40694674 - 40694600
Alignment:
Q  404 gatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||||| | ||||| |||||||||||||||||   | ||||||| ||| ||||||||| || ||||||||    
T  40694674 gatttggtgggtcgcatgttaattttaaccaatcaaatagattgtgttgtaaaatgtgtgttaaaacgtgtgttg 40694600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 43042207 - 43042164
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||    
T  43042207 acccacatgatttggtggggcc-atgtgaattttaatcaatcaaa 43042164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 333 - 488
Target Start/End: Original strand, 10056630 - 10056788
Alignment:
Q  333 acttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    ||||||||||||||||||||| || ||| |||||||| ||| |||||||| | ||||||||| ||||||||||||||| ||||||||| || ||||||||    
T  10056630 acttttcaacacactctttttgattggtcaaaattcacatggaacccaccaattttatatgggacccacatgatttggagggacccatatggattttaac 10056729  T
Q  433 caatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
     ||| |||   | |||||||||||||| |||||| |||||||||||||| |||||||||    
T  10056730 taattaaagagagtgtgttgaaaagtgcgtgttagaatgtgtgttgttagcattcctct 10056788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 329 - 475
Target Start/End: Original strand, 12275741 - 12275890
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||| ||||||||||| || ||| |||||||| ||| |||  ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  12275741 acacactttccaacacactctcttcaattggttaaaaatcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatatgaattt 12275840  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||| ||   | ||||||| ||||||||||||| |||||||||||    
T  12275841 taaccaatcgaagagagtgtgttggaaagtgtgtgttagaatgtgtgttg 12275890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 316 - 488
Target Start/End: Original strand, 40134378 - 40134549
Alignment:
Q  316 agaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggga 415  Q
    |||||||||||| |||||| ||| |||||||||| ||| || |||  ||||||| | |  ||| ||| ||||||||||| |||||||| |||||||||||    
T  40134378 agaaatgctagcaacacacattttaacacactctctttgattggt--aaattcacaggggacctaccaaatttatatgggacccacataatttggtggga 40134475  T
Q  416 cccatgtgaattttaaccaatca-aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||||||||||| | | ||||||| ||||||||||||| |||||| |||| || |||||||||    
T  40134476 cccatgtgaattttaaccaatcagagagtgtgttggaaagtgtgtgttaaaatgtgggttgctagcattcctct 40134549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 475
Target Start/End: Original strand, 49106895 - 49107057
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggg 414  Q
    |||||||| |||| ||||||||| |||||||| || ||| || | |||||||||| |||   || ||| |||||||||||  ||| ||||||||||||||    
T  49106895 gagaaatgttagcaacacactttccaacacacactctttgattgattaaaattcacatgggtcctaccaaatttatatggt-cccgcatgatttggtggg 49106993  T
Q  415 acccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||| ||||||||||||||||||||||   | ||||||||||||||||||||| ||||| |||||    
T  49106994 acctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttagaatgtatgttg 49107057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 488
Target Start/End: Original strand, 26862900 - 26863078
Alignment:
Q  313 atgagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    |||||||||| || | |||||| ||| ||||||||||  || || |||||||||||| |||  |  ||||  |||||||| | |||||||||||||||||    
T  26862900 atgagaaatgttatcaacacacattttaacacactctccttgattggttaaaattcacatgggattcaccatatttatataggacccacatgatttggtg 26862999  T
Q  413 ggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||||||||||||||| |||   | | || |||||||||||| ||| ||||||||||| || |||||||||    
T  26863000 ggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgttgctagcattcctct 26863078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 436
Target Start/End: Original strand, 2276280 - 2276387
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||||| ||| || |||||||||||| ||| | |||||| |||||||| || |||||||| |||||||||||  |||||||||||    
T  2276280 acacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatttataagggacccacataatttggtgggattcatgtgaattt 2276379  T
Q  429 taaccaat 436  Q
    ||||||||    
T  2276380 taaccaat 2276387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 366 - 478
Target Start/End: Original strand, 47497740 - 47497855
Alignment:
Q  366 ttcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca---aaaatgtgttgaaaagtgtgtgtt 462  Q
    |||| |||| ||||||| ||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||   ||||| | ||||||| ||||||||    
T  47497740 ttcaaatgagacccaccaaatttgtatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgtt 47497839  T
Q  463 acaatgtgtgttgtta 478  Q
    | ||||||||||||||    
T  47497840 agaatgtgtgttgtta 47497855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 3235562 - 3235675
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||| ||| ||||||| ||| || |||||||||||| |||| ||||| | |||||| |||| ||||||||  || ||| ||||||||||||||||    
T  3235562 acacactttccaatacactctctttgattggttaaaattcacatgagacccatcaaatttacatgggacccacatatttgggtcggacccatgtgaattt 3235661  T
Q  429 taaccaatcaaaaa 442  Q
    ||||||||||||||    
T  3235662 taaccaatcaaaaa 3235675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 463
Target Start/End: Complemental strand, 2276423 - 2276276
Alignment:
Q  319 aatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacc 417  Q
    ||||||||| |||||| ||| |||||||| | |||||| |||||||||||| ||||| |||||| |||| || |||  |||  || | |||||||||| |    
T  2276423 aatgctagcaacacacattttaacacactatctttaattggttaaaattcacatgaatcccaccaaatt-atgtgggtcccttataaatttggtgggatc 2276325  T
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgtta 463  Q
    |||||||||||||||||||||||   | |||||||||||||||||||||    
T  2276324 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 2276276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 24516678 - 24516581
Alignment:
Q  343 acactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||| ||||| || | |||||||||| |||  | ||||  |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24516678 acactttttttgattgattaaaattcacatgggatccactaaatttagatggaatccacatgatttggtgggacccatgtgaattttaaccaatcaaa 24516581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 640985 - 640901
Alignment:
Q  359 gttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaat 443  Q
    ||||||||||| |||| | | ||| ||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||    
T  640985 gttaaaattcacatgagatctaccaaatttatatggaatccacatgatttggtgtgacccatataaattttaaccaatcaaaaat 640901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 462
Target Start/End: Complemental strand, 11201445 - 11201293
Alignment:
Q  315 gagaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaa--cccacccaatttatatggaacccacatgatttggtg 412  Q
    ||||||| ||||| |||||  ||  |||||||||| |||||| |||||||| | | |||| |  |||| | ||||||||||  |||||| ||||||||||    
T  11201445 gagaaatactagcaacacatattctaacacactctctttaattggttaaaacttatatgagagacccatcaaatttatatgagacccacgtgatttggtg 11201346  T
Q  413 ggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgtt 462  Q
    |||||||||||||||||||| ||| |||   | ||||||| ||||||||||||    
T  11201345 ggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgtgtt 11201293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 439
Target Start/End: Complemental strand, 18802956 - 18802866
Alignment:
Q  349 tttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaa 439  Q
    |||||||| |||||||||||| |||  | || |  ||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  18802956 tttttaattggttaaaattcatatgggatccgcgaaatttatatggaaccaacattatttggtgggacctatgtgaattttaacaaatcaa 18802866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 484
Target Start/End: Original strand, 5443533 - 5443690
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||| ||| ||| |  ||||| |||||| ||   ||||||  || |||||||| | |||||| ||||||||| | | ||||||||||    
T  5443533 acacacttttcaacacattctgtttgaccggttagaattcacataggacccacaaaagttatatgggatccacataatttggtgg-agctatgtgaattt 5443631  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    |||||||||||| |   | ||||||||| ||||||||| ||||||||||| || |||||    
T  5443632 taaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgctagcattc 5443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 7526151 - 7526234
Alignment:
Q  359 gttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    ||||||||||| ||| | |||||| ||||||||||  |||  |||||||||||| ||| ||||| |||||||||||||||||||    
T  7526151 gttaaaattcacatggatcccaccaaatttatatgagaccagcatgatttggtgagacacatgtaaattttaaccaatcaaaaa 7526234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 436
Target Start/End: Original strand, 46074058 - 46074165
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||||| |||||||| | |||||| | |||||||| | |||  |||||   ||||||||||| | |||| ||||||| |||||| |||||||||||    
T  46074058 acacactttttaacacactttctttaatcgattaaaatttacatgggacccattaaatttatatgggatccacgtgatttgatgggactcatgtgaattt 46074157  T
Q  429 taaccaat 436  Q
    ||||||||    
T  46074158 taaccaat 46074165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 483
Target Start/End: Complemental strand, 3235705 - 3235538
Alignment:
Q  319 aatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacc 417  Q
    ||||||||| |||||| || ||||||||||||||| || |||||||||||| |||   || |||||| | || |||  ||||  | | |||| |||| |     
T  3235705 aatgctagcaacacacattccaacacactctttttgattggttaaaattcacatgggtccgacccaaat-atgtgggtcccatgtaaatttgatgggtct 3235607  T
Q  418 catgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    ||||||||||||||||||||||| |   ||| ||| ||||||||||||| |||||||||||||| ||||    
T  3235606 catgtgaattttaaccaatcaaagagagtgtattggaaagtgtgtgttaaaatgtgtgttgttagcatt 3235538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 45200580 - 45200475
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||| |||||||||||||| | ||||||||||  |||   ||||| ||||||||||  | |||||||||||||||| |||||| | ||||||||  |    
T  45200580 ttttcaatacactctttttaattgattaaaattcatttgaggtccaccaaatttatatgagatccacatgatttggtggaacccatataaattttaataa 45200481  T
Q  435 atcaaa 440  Q
    ||||||    
T  45200480 atcaaa 45200475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 473
Target Start/End: Original strand, 316351 - 316509
Alignment:
Q  318 aaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacc 417  Q
    |||||||||| |||||| ||| |||||||||  ||   | |||||||||||| ||||   ||||| ||||| ||||  |||||| |||||| |||| ||     
T  316351 aaatgctagcaacacacattttaacacactcacttatcttggttaaaattcacatgagttccaccaaatttgtatgagacccacttgatttagtggaact 316450  T
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgt 473  Q
    |||||  |||||| |||||||||   ||||||||||||| ||||||||| |||| ||||    
T  316451 catgtagattttatccaatcaaagagaatgtgttgaaaaatgtgtgttaaaatgcgtgt 316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 484
Target Start/End: Original strand, 5452578 - 5452735
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||| ||| ||| |  ||||| |||||| ||   ||||||  || |||||||| | |||||| ||| ||||| | | ||||||||||    
T  5452578 acacacttttcaacacattctgtttgaccggttagaattcacataggacccacaaaagttatatgggatccacataattgggtgg-agctatgtgaattt 5452676  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    |||||||||||| |   | ||||||||| ||||||||| ||||||||||| || |||||    
T  5452677 taaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgctagcattc 5452735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 488
Target Start/End: Original strand, 26647694 - 26647855
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||| | ||||||| || |||||||||||| |||| ||  | | || |||||||  |||||| | ||||| | | ||  |||||||||     
T  26647694 acacatttttcaacatagtctttttcattggttaaaattcacatgagact-atcaaaattatatgagacccacgtaatttgatagaacttatgtgaattc 26647792  T
Q  429 taaccaatcaaaaat---gtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||||||   |||||||||||||||| ||| ||||| ||||| || |||||||||    
T  26647793 taaccaatcaaaaatagtgtgttgaaaagtgtgtattagaatgtatgttgctagcattcctct 26647855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 36992976 - 36992845
Alignment:
Q  314 tgagaaatgctagcgacacactttt--caacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggt 411  Q
    |||||||||||||| ||| || |||  |||||||| || ||||||  |||| |||||| |||| ||||||| || | |||||| ||  ||||||||||||    
T  36992976 tgagaaatgctagcaacatacattttccaacacacgctctttaatttgttagaattcacatgagacccaccaaaatcatatgggacttacatgatttggt 36992877  T
Q  412 gggacccatgtgaatttt-aaccaatcaaaaa 442  Q
    | ||  |||||||||||| |||||||||||||    
T  36992876 gagattcatgtgaattttaaaccaatcaaaaa 36992845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 18089753 - 18089816
Alignment:
Q  377 cccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||| |||||||||||   |||||| ||||||| ||||||||||||||||||||||| ||||    
T  18089753 cccaccaaatttatatgggttccacataatttggttggacccatgtgaattttaaccaaccaaa 18089816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 36129129 - 36129092
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    |||||||||||| |||||||||||||||||||||||||    
T  36129129 atttggtgggactcatgtgaattttaaccaatcaaaaa 36129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 7017144 - 7017200
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||||||| | |||||| ||||||| ||||  ||||||||||||||||||||||    
T  7017144 aatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaa 7017200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 7032502 - 7032558
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||||||| | |||||| ||||||| ||||  ||||||||||||||||||||||    
T  7032502 aatttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaa 7032558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 29356998 - 29356942
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||| |||||| | |||| ||| ||||||| ||||||||||||||||||||||||||    
T  29356998 aattcatatgggatccacgtgaattggtggaacccatgtgaattttaaccaatcaaa 29356942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 475
Target Start/End: Complemental strand, 31042184 - 31042126
Alignment:
Q  420 tgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||| ||| |||||||    
T  31042184 tgtgaattttaaccaatcaaagataatgtattgaaaagtgtgtgttaaaatatgtgttg 31042126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 10056681 - 10056621
Alignment:
Q  407 ttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttac 464  Q
    ||||||||  ||||||||||||| ||||||||||||   ||||||||||||| ||||||||    
T  10056681 ttggtgggttccatgtgaattttgaccaatcaaaaagagtgtgttgaaaagtatgtgttac 10056621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 24516646 - 24516704
Alignment:
Q  416 cccatgtgaattttaaccaatc-aaaaatgtgttgaaaagtgtgtgttacaatgtgtgt 473  Q
    |||||||||||||||| ||||| ||||| ||||||||||  |||||||| |||||||||    
T  24516646 cccatgtgaattttaatcaatcaaaaaaagtgttgaaaaaagtgtgttaaaatgtgtgt 24516704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 438
Target Start/End: Complemental strand, 42986358 - 42986237
Alignment:
Q  316 agaaatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggga 415  Q
    |||||||||||| ||||| ||||||||| | | ||||| || | |||||||||| ||  | |||||| |||||| ||||  | ||||||||||||| |||    
T  42986358 agaaatgctagcaacacatttttcaacatatttttttttattgattaaaattcacatagatcccaccaaatttaaatgggtctcacatgatttggt-gga 42986260  T
Q  416 cccatgtgaattttaaccaatca 438  Q
    | | ||||| |||||| ||||||    
T  42986259 ctcgtgtgagttttaatcaatca 42986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 253713 - 253661
Alignment:
Q  410 gtgggacccatgtgaattttaaccaatcaaaaatgtgttgaaaagtgtgtgtta 463  Q
    ||||||||||||||||||||||| ||| ||||  ||||||||||||| ||||||    
T  253713 gtgggacccatgtgaattttaacaaat-aaaagagtgttgaaaagtgagtgtta 253661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 40803223 - 40803294
Alignment:
Q  406 tttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    ||||||||  ||||||||||||||||||||| |||||   ||| || |||||||| ||||| ||||||||||    
T  40803223 tttggtggatcccatgtgaattttaaccaataaaaaatagtgttttaaaaagtgtatgttagaatgtgtgtt 40803294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 7017241 - 7017182
Alignment:
Q  312 aatgagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattca 369  Q
    |||||||||||||||| ||||||  ||||||| ||||||| ||| || ||||||||||||    
T  7017241 aatgagaaatgctagcaacacacatttttcaatacactctctttgattggttaaaattca 7017182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 7032599 - 7032540
Alignment:
Q  312 aatgagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattca 369  Q
    |||||||||||||||| ||||||  ||||||| ||||||| ||| || ||||||||||||    
T  7032599 aatgagaaatgctagcaacacacatttttcaatacactctctttgattggttaaaattca 7032540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 49107041 - 49107001
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattca 369  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  49107041 acacacttttcaacacactctctttgattggttaaaattca 49107001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 329 - 486
Target Start/End: Original strand, 36480710 - 36480870
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||| |||| ||||||||||| ||| || |||||||||||| |||  ||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  36480710 acaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaatttatatgggacccacatgatttggtgggacccatgtgaattt 36480809  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcct 486  Q
    || |||||||||   |   ||||||||||||||||||| ||||||||||| || |||||||    
T  36480810 tagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgtgttgctagcattcct 36480870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 335 - 444
Target Start/End: Complemental strand, 19158788 - 19158680
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||| ||||||||||| ||  ||||||||||| ||||| |||||| |||||||||| ||||||||| |||| ||||||| |||||||||||||||||    
T  19158788 ttttcaatacactctttttgattagttaaaattcatatgaa-cccaccaaatttatatgaaacccacataatttagtgggactcatgtgaattttaacca 19158690  T
Q  435 atcaaaaatg 444  Q
    ||||||||||    
T  19158689 atcaaaaatg 19158680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 29955174 - 29955012
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||| |||||||| || ||  ||||||||||| |||  | ||| | ||||||| ||| |||||||||||||| ||||||||||||||||||    
T  29955174 acacacttttcaatacactcttcttgattagttaaaattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattt 29955075  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||   ||||||||||||| ||| ||| ||| | ||||| || | |||||||    
T  29955074 taaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgctagctttcctct 29955012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 30004328 - 30004166
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||| |||||||| || ||  ||||||||||| |||  | ||| | ||||||| ||| |||||||||||||| ||||||||||||||||||    
T  30004328 acacacttttcaatacactcttcttgattagttaaaattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattt 30004229  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||   ||||||||||||| ||| ||| ||| | ||||| || | |||||||    
T  30004228 taaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgctagctttcctct 30004166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 483
Target Start/End: Complemental strand, 32881133 - 32880976
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||| ||||||| || |||||||||| | | || ||||||| ||||||||||| | ||||||||||| ||||||||||||||||| |    
T  32881133 acacatttttcaacacaatcttttttattggttaaaatttacacgagacccaccaaatttatatgggatccacatgattttgtgggacccatgtgaatat 32881034  T
Q  429 taaccaatca---aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    ||||||||||   | | | ||||||||| |||||| || |||||||||| ||| ||||    
T  32881033 taaccaatcaaggagagtatgttgaaaaatgtgtgataaaatgtgtgttcttagcatt 32880976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 399 - 488
Target Start/End: Original strand, 3901566 - 3901657
Alignment:
Q  399 cacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  3901566 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta-aatgtatgttgttagcattcctct 3901657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 484
Target Start/End: Complemental strand, 31205495 - 31205347
Alignment:
Q  339 caacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca 438  Q
    ||||||||||| ||| || ||| |||||||| |||| ||||||| | ||||||||| ||||||||||||||||  ||||||||| |||||||||||||||    
T  31205495 caacacactctctttgattggtcaaaattcacatgagacccaccaattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatca 31205396  T
Q  439 aa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    ||   | ||||||| ||| | ||||||| || ||||||||||| |||||    
T  31205395 aagagagtgtgttggaaaatatgtgttaaaacgtgtgttgttagcattc 31205347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 19560765 - 19560603
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||| ||| || ||||||||  || | |  | ||||  ||||| ||||| ||||||||||||||||||||||||| |||||||    
T  19560765 acacatttttcaacacactctctttgattggttaaaaagcacaagggatccactaaatttgtatgggacccacatgatttggtgggacccatatgaattt 19560666  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
     |||||||||||   | ||| |||||||||||| |||| ||||| |||||||| |||||||||    
T  19560665 caaccaatcaaagcgagtgtattgaaaagtgtgcgttagaatgtatgttgttagcattcctct 19560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 487
Target Start/End: Complemental strand, 37341359 - 37341203
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||| ||||| ||| | ||| || |||||||||||| ||| ||||||   ||||||||||  |||||||||||||||| ||||||||||||||||    
T  37341359 acacactttccaacatactttatttgattggttaaaattcacatgtaacccattaaatttatatgagacccacatgatttggt-ggacccatgtgaattt 37341261  T
Q  429 taaccaatcaaaaa-tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    |||| |||||||||   ||||| |||  |||||||| |||||||||||||| ||||||||    
T  37341260 taactaatcaaaaagaatgttggaaa--gtgtgttaaaatgtgtgttgttaacattcctc 37341203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 432
Target Start/End: Original strand, 14345160 - 14345257
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    ||||||||||||| | ||| || ||||||||| || |||| ||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  14345160 ttttcaacacactttctttgattggttaaaatccacatgagacccaccaaatttatatgggacccacatgatttggtgggattcatgtgaattttaac 14345257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 35357326 - 35357431
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||||||| ||| || |||||||| ||| |||  | ||||| ||||||||||| ||  |||||||||||| ||||||||||||||||||||||    
T  35357326 ttttcaacacactctctttgattggttaaaactcacatgtgaaccaccaaatttatatgggacttacatgatttggtaggacccatgtgaattttaacca 35357425  T
Q  435 atcaaa 440  Q
    ||||||    
T  35357426 atcaaa 35357431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 440
Target Start/End: Original strand, 11532438 - 11532549
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||||  |||| ||||||||| || ||| |||||||| |  | ||||||  ||||||||||| | |||||||||||||||| ||||||||||||||    
T  11532438 acacactttctaacatactctttttgattggtcaaaattcacacaagacccactaaatttatatgggatccacatgatttggtggaacccatgtgaattt 11532537  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  11532538 taaccaatcaaa 11532549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 475
Target Start/End: Original strand, 51541254 - 51541397
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||| ||||| ||||| || |||||||| ||| |||  ||||||| ||  ||||| | ||||||||||||||||||||| ||| |||||||||||||    
T  51541254 ttttcaatacactatttttgattggttaaaactcacatgtgacccaccaaaagtatataggacccacatgatttggtgggactcatctgaattttaacca 51541353  T
Q  435 atcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||   ||| ||||||| | ||||||| || ||||||||    
T  51541354 atcaaaaaaagtgtattgaaaaatatgtgttagaaggtgtgttg 51541397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 315 - 436
Target Start/End: Complemental strand, 40554190 - 40554067
Alignment:
Q  315 gagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    ||||||||||||| ||||||  ||||||| ||||||| ||| || |||||||| ||| ||||   ||| | |||||||||||  | ||||||||||||||    
T  40554190 gagaaatgctagcaacacacaattttcaatacactctctttgattggttaaaactcacatgagttccatcaaatttatatgggtctcacatgatttggtg 40554091  T
Q  413 ggacccatgtgaattttaaccaat 436  Q
    ||||||||||||||||||| ||||    
T  40554090 ggacccatgtgaattttaatcaat 40554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 45332557 - 45332657
Alignment:
Q  339 caacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca 438  Q
    ||||||||| | |||||| |||||||||||| ||| || ||||| ||||||||||| ||||||||||||||||  ||||||||| ||||| || ||||||    
T  45332557 caacacactttctttaattggttaaaattcacatggaatccaccaaatttatatgggacccacatgatttggtcagacccatgtaaatttaaaacaatca 45332656  T
Q  439 a 439  Q
    |    
T  45332657 a 45332657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 3901629 - 3901499
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||||| ||| || |||||||||||| |||   |||||| |||  || ||     ||||||||||||||||||||||||||||||    
T  3901629 acacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatc-atgtg-----cacatgatttggtgggacccatgtgaattt 3901536  T
Q  429 taaccaatcaaa---aatgtgttgaaaagtgtgtgtt 462  Q
    ||||||||||||   ||||||||||||| | ||||||    
T  3901535 taaccaatcaaagagaatgtgttgaaaaatatgtgtt 3901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 358 - 484
Target Start/End: Original strand, 36007387 - 36007516
Alignment:
Q  358 ggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca---aaaatgtgttgaaaag 454  Q
    |||||||||||| |||  | ||||| |||||||||||  ||||||||||||   ||| | ||||||||||||||||| |||   ||||||||||||||||    
T  36007387 ggttaaaattcatatgggatccaccaaatttatatggggcccacatgatttatgggggctcatgtgaattttaaccactcaaagaaaatgtgttgaaaag 36007486  T
Q  455 tgtgtgttacaatgtgtgttgttatcattc 484  Q
    ||  ||||| ||||||||||| || |||||    
T  36007487 tgaatgttaaaatgtgtgttgctaacattc 36007516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 488
Target Start/End: Complemental strand, 19554467 - 19554360
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatc 480  Q
    ||||| ||||| ||||||||| ||||||||||||||| |||||||||| |||||||| |   ||| ||||  |||| |||||| |||||||||||||| |    
T  19554467 aatttgtatgggacccacatggtttggtgggacccatatgaattttaatcaatcaaagagggtgtattgaccagtgcgtgttagaatgtgtgttgttagc 19554368  T
Q  481 attcctct 488  Q
    ||| ||||    
T  19554367 atttctct 19554360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 36026863 - 36026955
Alignment:
Q  397 cccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa-tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||||  |||| | || |||||||||||| |||||| | ||| |||||||||| |||||| |||||||||||||| |||||||||    
T  36026863 cccacatgatttgtggggatctatatgaattttaaccgatcaaagagtgtattgaaaagtgagtgttaaaatgtgtgttgttaacattcctct 36026955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 436
Target Start/End: Complemental strand, 40117862 - 40117757
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||||||||||||||||| || || |||||||||||| |||   ||  || ||||||  ||| ||||||||||||||||||||  || ||||||||    
T  40117862 acacacttttcaacacactcttattcattggttaaaattcaaatgggtcctgccaaatttaagtgggacccacatgatttggtggga--cacgtgaattt 40117765  T
Q  429 taaccaat 436  Q
    ||||||||    
T  40117764 taaccaat 40117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 36480767 - 36480686
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcatt 483  Q
    ||||| |||| |||||||||||||||||||||||||   | ||||||| |||| |||||||| |||||||||||||| ||||    
T  36480767 atttgttgggtcccatgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttagcatt 36480686  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 486
Target Start/End: Complemental strand, 16729307 - 16729149
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttta 430  Q
    |||||||||| || | ||||||| || |||||| ||| | |||  || || | |||||| |||| | ||| ||||||||||||||| |||||| ||||||    
T  16729307 acacttttcagcatattcttttttattggttaacatttacatgtgactcatcaaatttaaatgggatccatatgatttggtgggactcatgtgcatttta 16729208  T
Q  431 accaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcct 486  Q
    || |||||||||   | ||||||| |||| |||||| || ||||||| ||| |||||||    
T  16729207 actaatcaaaaaaagtatgttgaagagtgcgtgttaaaacgtgtgttattagcattcct 16729149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 48240387 - 48240462
Alignment:
Q  364 aattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||| ||| |||||| | |||||||||||||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  48240387 aattcacatggaacccatcaaatttatatggaacccacatgatttggt-ggatccatgtaaattttaagtaatcaaa 48240462  T

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Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 4276977 - 4277118
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaa-----cccacccaatttatatggaacccacatgatttggtgggacccatgtg 423  Q
    ||||||||||||| | ||||||||| || | |||||||||| |||| |     |||||| ||||||||||| |||||||||||||  || ||||||| |     
T  4276977 acacacttttcaatatactctttttgattgattaaaattcacatgacatgagacccaccaaatttatatgggacccacatgatttaatgagacccatata 4277076  T
Q  424 aattttaaccaatca---aaaatgtgttgaaaagtgtgtgtt 462  Q
    ||| |||| ||||||   ||| ||||||||||| ||||||||    
T  4277077 aatattaatcaatcaaagaaagtgtgttgaaaaatgtgtgtt 4277118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 488
Target Start/End: Original strand, 35415049 - 35415134
Alignment:
Q  406 tttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||| |||| ||| |||||||||| ||| |||||   | ||||||||||||||||||| |||||||||||||| |||| ||||    
T  35415049 tttggtgtgacctatgcgaattttaacaaataaaaaagtatatgttgaaaagtgtgtgttaaaatgtgtgttgttagcattactct 35415134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 442
Target Start/End: Complemental strand, 9145490 - 9145440
Alignment:
Q  392 tggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    |||||| || || |||||||||||||||||||||||||||||||| |||||    
T  9145490 tggaactcatatcatttggtgggacccatgtgaattttaaccaataaaaaa 9145440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 488
Target Start/End: Complemental strand, 37189274 - 37189120
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    |||| |||| ||||| ||| || |||||||||||| |||||  ||||  ||| |||| ||  | |||||||||||||||||||| ||   |||||||| |    
T  37189274 tttttaacagactctctttgattggttaaaattcacatgaattccactaaatctatacgggtctcacatgatttggtgggacccgtgcacattttaacta 37189175  T
Q  435 atcaaaaatg-tgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    || |||||   |||||||||  |||||||| ||||| ||||||||||||| ||||    
T  37189174 ataaaaaaaaatgttgaaaaacgtgtgttaaaatgtatgttgttatcatttctct 37189120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 40763391 - 40763473
Alignment:
Q  349 tttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaa 431  Q
    ||||| || |||||||||||| |||| | ||| | ||||||||||| | |||||||||||||||| || || |||||||||||    
T  40763391 ttttttattggttaaaattcacatgagatccatcaaatttatatgggatccacatgatttggtggaactcaggtgaattttaa 40763473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 35527127 - 35527172
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaatcaaaa 441  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||    
T  35527127 acccacatgatttggtgggatccatgtgaattttaacaaataaaaa 35527172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 1458628 - 1458698
Alignment:
Q  417 ccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    |||| ||||||| |||||||||| ||   ||||||||||||||| ||||| |||||||||||||| |||||    
T  1458628 ccatatgaatttaaaccaatcaagaagagtgtgttgaaaagtgtttgttagaatgtgtgttgttagcattc 1458698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 13777683 - 13777766
Alignment:
Q  359 gttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    ||||||||||| | ||||  || | |||||||||||||||||| |||| |||||| || ||| ||||||||||| | |||||||    
T  13777683 gttaaaattcacacgaaattcatcgaatttatatggaacccacgtgatatggtggaacgcatatgaattttaacaattcaaaaa 13777766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 1753397 - 1753339
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    ||||||||||| | |||||||||||| ||  || ||||| |||||||||||||||||||    
T  1753397 aatttatatgggaaccacatgatttgatgaaactcatgtaaattttaaccaatcaaaaa 1753339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 30268146 - 30268084
Alignment:
Q  378 ccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||| ||||||| |||  | |||||| |||||||||||||||||| ||||||| ||||||||    
T  30268146 ccaccaaatttatttgggtctcacatggtttggtgggacccatgtggattttaaacaatcaaa 30268084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 16993339 - 16993416
Alignment:
Q  398 ccacatgatttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    |||||||||||||||||| |||| ||| | ||||||||| ||| | ||||||| ||||||| | ||| ||||||||||    
T  16993339 ccacatgatttggtgggatccatatgactgttaaccaattaaagagtgtgttggaaagtgtatattagaatgtgtgtt 16993416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 484
Target Start/End: Complemental strand, 26986362 - 26986271
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaatca---aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    ||||| || ||||| | |||||||||||||||||||| |||||   | ||||||||||||||| | ||||| ||| ||||||| || |||||    
T  26986362 acccatataatttgataggacccatgtgaattttaactaatcaaggagaatgtgttgaaaagtatatgttaaaatatgtgttgctaacattc 26986271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 31524131 - 31524094
Alignment:
Q  403 tgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  31524131 tgatttggtgcgacccatgtaaattttaaccaatcaaa 31524094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 4304830 - 4304786
Alignment:
Q  396 acccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  4304830 acccaaatgatttggtgggatccatgtgaattttaatccatcaaa 4304786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 48543440 - 48543492
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaat 436  Q
    ||||||||||| | |||| ||||||| || ||| |||||||||||||||||||    
T  48543440 aatttatatgggatccacgtgatttgatgagactcatgtgaattttaaccaat 48543492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 53247791 - 53247855
Alignment:
Q  341 acacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga 405  Q
    |||||||||| ||||| |||||||||||| |||||||  ||  | |||||||| |||||||||||    
T  53247791 acacactcttattaattggttaaaattcacatgaaacttactaattttatatgaaacccacatga 53247855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 329 - 463
Target Start/End: Original strand, 31970123 - 31970260
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||  |||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||    
T  31970123 acacatttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacatgatttggtgggacccatatgaaatt 31970222  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgtta 463  Q
    ||| |||| |||||   |||||||||||| ||||||||    
T  31970223 taatcaattaaaaagagtgtgttgaaaagcgtgtgtta 31970260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 474
Target Start/End: Complemental strand, 38663803 - 38663639
Alignment:
Q  315 gagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    ||||||||||||| |||| |  ||||||||| |||||||||||| |||||||||||| |||  ||||||| ||||||||| | ||||| |||||||||||    
T  38663803 gagaaatgctagcaacacgcatttttcaacatactctttttaattggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtg 38663704  T
Q  413 ggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgtt 474  Q
    ||||| ||||||||| ||||||||||||   | ||||||||||| | ||||||| ||||||||||    
T  38663703 ggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtgtt 38663639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 329 - 440
Target Start/End: Original strand, 2542705 - 2542816
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| ||||||||||||||| ||| || |||||||||| | ||||  |||||| |||||||||||||||||||||||||||||| | ||||||||||||    
T  2542705 acacatttttcaacacactctctttgattggttaaaatttacatgaggcccaccaaatttatatggaacccacatgatttggtggaagccatgtgaattt 2542804  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  2542805 taaccaatcaaa 2542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 477
Target Start/End: Complemental strand, 49403602 - 49403457
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||||| ||||| ||  ||||||||||| |||| ||||||| |||||||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  49403602 ttttcaacacacttttttttatttgttaaaattcacatgagacccaccaaatttatatggaacccacataatttgatgggacttatgtgaattttaacca 49403503  T
Q  435 atc---aaaaatgtgttgaaaagtgtgtgttacaatgtgtgttgtt 477  Q
    |||   |||||| |||| |||| ||||||||| ||| ||| |||||    
T  49403502 atcataaaaaatatgttaaaaaatgtgtgttagaatatgtattgtt 49403457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 488
Target Start/End: Complemental strand, 7444415 - 7444255
Alignment:
Q  331 acacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttta 430  Q
    ||||||||||||||| ||| ||| ||| ||||||||||| |||  ||| ||| ||||||||||| |||||||||||||||||||| |  | |||||||||    
T  7444415 acacttttcaacacattctctttgatgagttaaaattcacatgggacctaccaaatttatatgggacccacatgatttggtgggaactctttgaatttta 7444316  T
Q  431 accaatca---aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||| || |   ||||||||||||||| ||||||||| ||||||||||| || |||| ||||    
T  7444315 accgattaaagaaaatgtgttgaaaaatgtgtgttaaaatgtgtgttgctagcatttctct 7444255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 332 - 440
Target Start/End: Complemental strand, 34437730 - 34437623
Alignment:
Q  332 cacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaa 431  Q
    |||||||||||||||||| ||| || |||||||||||| |||   ||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  34437730 cacttttcaacacactctctttgattggttaaaattcacatgggtccc-cccaaattatatgggtcccacatgatttggtgggacccatgtgaattttaa 34437632  T
Q  432 ccaatcaaa 440  Q
    |||||||||    
T  34437631 ccaatcaaa 34437623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 475
Target Start/End: Original strand, 34437583 - 34437749
Alignment:
Q  313 atgagaaatgctagcgacacac--ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttgg 410  Q
    ||||| ||||||||| ||||||  ||||||||| ||||| ||| || |||||||||||| |||   |||||| |||  || ||| ||||| || ||||||    
T  34437583 atgaggaatgctagcaacacacatttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatc-atgtgggacccatataatttgg 34437681  T
Q  411 tgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
     |||||||||||||||||||||||||||||   | |||||||||||||| |||||| |||||||||||    
T  34437682 ggggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttg 34437749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 458
Target Start/End: Complemental strand, 45215463 - 45215332
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||| ||||| ||||||| || | |||||||||| ||||   ||||| |||||||| ||| || ||||||||||||||||| |||||| ||||    
T  45215463 acacacttttcgacacattctttttgattgattaaaattcatatgagttccaccaaatttatacggatcctacatgatttggtgggactcatgtg-attt 45215365  T
Q  429 taaccaatc---aaaaatgtgttgaaaagtgtg 458  Q
    |||||||||    ||||||||||||||||||||    
T  45215364 taaccaatctaagaaaatgtgttgaaaagtgtg 45215332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 330 - 440
Target Start/End: Complemental strand, 45563201 - 45563091
Alignment:
Q  330 cacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaatttt 429  Q
    |||||||||||||||||| | ||| || |||||||||| | |||| | ||||| ||||||||||  | | |||||||||||||||| ||||||| |||||    
T  45563201 cacacttttcaacacactttctttgatcggttaaaatttacatgagatccaccaaatttatatgagatcaacatgatttggtgggagccatgtgcatttt 45563102  T
Q  430 aaccaatcaaa 440  Q
    |||||||||||    
T  45563101 aaccaatcaaa 45563091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 23318023 - 23317942
Alignment:
Q  351 tttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaac 432  Q
    |||||| |||||||||||| |||| | ||||  ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  23318023 tttaattggttaaaattcacatgagatccactaaatttatatgggacccacatgatttggtgggacctatgtgaattttaac 23317942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 40669065 - 40668954
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||||||||||| ||| || |||||||||||| | |    ||||| |||||||||||  ||||||| |||| ||| ||||||||||| |||    
T  40669065 acacacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaatttatatgggtcccacataattttgtgagacccatgtgagttt 40668966  T
Q  429 taaccaatcaaa 440  Q
    ||||||||||||    
T  40668965 taaccaatcaaa 40668954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 731339 - 731446
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||| |  |||| || | |||||||||| |||| |  |||| ||||||||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  731339 ttttcaacacatttattttgattgattaaaattcacatgagattcaccaaatttatatgggacccacatgatttggtgcgactcatgtaaattttaacca 731438  T
Q  435 atcaaaaa 442  Q
    || |||||    
T  731439 ataaaaaa 731446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 21281539 - 21281464
Alignment:
Q  404 gatttggtgggacccatgtgaattttaaccaatcaaa----aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||||||||||||| ||||||||||||||||||||||    ||||||||||||||||| ||||| ||| |||||||    
T  21281539 gatttggtgggacctatgtgaattttaaccaatcaaaaaagaatgtgttgaaaagtgtatgttaaaatatgtgttg 21281464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 475
Target Start/End: Complemental strand, 5695826 - 5695665
Alignment:
Q  316 agaaatgctagcgacacacttttcaacaca--ctctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgg 413  Q
    |||||||||||||||| || ||| ||||||  |||| ||| || | |||||||||| |||| ||||| | ||||||||||| | || ||||||||||| |    
T  5695826 agaaatgctagcgacatacattttaacacatactctctttgattgtttaaaattcatatgagacccatcaaatttatatgggatcc-catgatttggtag 5695728  T
Q  414 gacccatgtgaattttaaccaatcaaaaa--tgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
      | ||| |||||||||| |||| |||||  ||||||||||||||||||||| ||| |||||||    
T  5695727 t-ctcatatgaattttaaacaataaaaaaaatgtgttgaaaagtgtgtgttaaaatatgtgttg 5695665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 40374054 - 40374150
Alignment:
Q  343 acactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||| ||| || |||||||||||| ||   || || | ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  40374054 acactctctttgatcggttaaaattcacataggactcatcaaatttatatgggacccacatgatttggtggg-gccatgtgaattttaaccaatcaaa 40374150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 453
Target Start/End: Original strand, 45925111 - 45925238
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||||||||||| ||||| | |||||| | |||||||| | ||| |  ||| | ||||||||||| |||||||| |||||||| ||| ||| |||||||    
T  45925111 acacacttttcaatacactttatttaattgattaaaattgatatggagtccatcaaatttatatgggacccacataatttggtgagactcatatgaattt 45925210  T
Q  429 taaccaatca---aaaatgtgttgaaaa 453  Q
    ||| ||||||   |||||||||||||||    
T  45925211 taatcaatcaaagaaaatgtgttgaaaa 45925238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 487
Target Start/End: Original strand, 49822607 - 49822692
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    ||||| ||||| ||||||||||||||||||||||||   | ||||||||||| ||||||||| ||| ||||||| || ||||||||    
T  49822607 atttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgttgctagcattcctc 49822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 49822664 - 49822566
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggt-gggacccatgtgaat 426  Q
    ||||| ||||||||||||||| ||| || |||||||||||| ||| | |||| | |||||||| || ||||| || ||||||| |||||||||||||||    
T  49822664 acacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaatttatacgggacccatataatttggtggggacccatgtgaat 49822566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 7444360 - 7444446
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||| || |||||||||||||||||  ||||||   ||||||||||||||||| ||||| ||||||||||| || |||| ||||    
T  7444360 atttggtaggtcccatgtgaattttaactcatcaaagagaatgtgttgaaaagtgtttgttagaatgtgtgttgctaacatttctct 7444446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 11120321 - 11120379
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    |||| ||||| |||| |||||||||||||||| || |||||||||||| ||||||||||    
T  11120321 aattaatatgaaaccaacatgatttggtgggatccgtgtgaattttaatcaatcaaaaa 11120379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 15366542 - 15366475
Alignment:
Q  424 aattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||||||||||   ||||||| ||||||||| ||| ||||||||||| || |||||||||    
T  15366542 aattttaaccaatcaaaaagagtgtgttggaaagtgtgtcttagaatgtgtgttgctagcattcctct 15366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 440
Target Start/End: Complemental strand, 32543840 - 32543719
Alignment:
Q  319 aatgctagcgacacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggaccc 418  Q
    ||||||| | |||||| ||||  |||||||| |||||| |||||||||||| ||||| ||  || ||||||||||  |  ||  ||||||||||||| ||    
T  32543840 aatgctatcaacacacatttcgccacactctatttaattggttaaaattcacatgaatcctgccaaatttatatgtgatacatgtgatttggtgggatcc 32543741  T
Q  419 atgtgaattttaaccaatcaaa 440  Q
    |  ||||||||||| |||||||    
T  32543740 acatgaattttaactaatcaaa 32543719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 22336973 - 22336889
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaatgtgttgaaaagtgtgtgttacaatgtgt 471  Q
    ||||||||||| | |||  ||||||| || || |||||||||||||||||||||||| | |||||||||  ||||||||| |||||||    
T  22336973 aatttatatgggatccaattgatttgatgagatccatgtgaattttaaccaatcaaaga-gtgttgaaa--tgtgtgttaaaatgtgt 22336889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 463
Target Start/End: Complemental strand, 31970256 - 31970119
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatga-tttggtgggacccatgtgaatt 427  Q
    |||| ||||||||||||||||||||||| | ||||| |||| |||   |||||| |||  || |||  |||| || | |||||||||  | |||||||||    
T  31970256 acacgcttttcaacacactctttttaattgattaaatttcatatgggtcccaccaaatc-atgtgggtcccatataaatttggtgggttcaatgtgaatt 31970158  T
Q  428 ttaaccaatcaaaaa---tgtgttgaaaagtgtgtgtta 463  Q
    |||||||||||||||   ||||||||||| |||||||||    
T  31970157 ttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 31970119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 40669008 - 40669079
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||||||| |||| |||||||||||||||||||||   | |||||||||||  |||||||| |||||||||||    
T  40669008 atttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgttgaaaa--gtgtgttaaaatgtgtgttg 40669079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 471
Target Start/End: Original strand, 16257603 - 16257672
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgt 471  Q
    |||||||||||| ||||| |||||||||  ||||||   ||||||||||||| ||||||||| |||||||    
T  16257603 atttggtgggacacatgtcaattttaacatatcaaaaataatgtgttgaaaaatgtgtgttaaaatgtgt 16257672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 33422737 - 33422662
Alignment:
Q  359 gttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||| | ||  |||||| ||||| |||||||||||||| ||||||||| | |||| ||||||| |||||    
T  33422737 gttaaaattcatacgagtcccaccaaatttgtatggaacccacataatttggtggaaaccatatgaatttcaacca 33422662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 35752190 - 35752132
Alignment:
Q  319 aatgctagcgacacact--tttcaacacactctttttaatgggttaaaattcagatgaa 375  Q
    ||||||||| |||||||  |||||||||||| ||||| || ||||||||||||||||||    
T  35752190 aatgctagcaacacactgttttcaacacactattttttattggttaaaattcagatgaa 35752132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 34783405 - 34783493
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgt 469  Q
    ||||||||||| ||  | ||||||||| |||| |||| |||||||||||||||||||   | |||||||| ||||||||| || |||||    
T  34783405 aatttatatgggactaaaatgatttggcgggagccatatgaattttaaccaatcaaagatagtgtgttgagaagtgtgtgctagaatgt 34783493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 39131621 - 39131679
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    |||||||| || |||||| ||||||||||| | | |||||||||| |||||||||||||    
T  39131621 aatttatacgggacccacttgatttggtggcaactatgtgaatttcaaccaatcaaaaa 39131679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 18075266 - 18075217
Alignment:
Q  363 aaattcagatgaaacccacccaatttatatggaacccacatgatttggtg 412  Q
    ||||||| ||| | |||||| ||||||||||| |||||||||||||||||    
T  18075266 aaattcatatggatcccaccaaatttatatgggacccacatgatttggtg 18075217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 38663730 - 38663767
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaaaa 442  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  38663730 atttggtgggtcccatgtgaattttaaccaattaaaaa 38663767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 440
Target Start/End: Complemental strand, 939463 - 939359
Alignment:
Q  336 tttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaa 435  Q
    |||||||||| | | ||| || |||||||||| | |||  || |||| ||||||||||| | |||||| ||||| || ||   |||||||||||||||||    
T  939463 tttcaacacattatctttgattggttaaaatttacatgggacacaccaaatttatatgggatccacataatttgatgagatttatgtgaattttaaccaa 939364  T
Q  436 tcaaa 440  Q
    |||||    
T  939363 tcaaa 939359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 16661862 - 16661808
Alignment:
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgt 469  Q
    |||||||||||||||| ||||||   ||||||||||||| ||||||||| |||||    
T  16661862 catgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 16661808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 468
Target Start/End: Complemental strand, 38948228 - 38948086
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||||| |||||||||| ||| ||  |||| |||||| ||| |||||| | || |||||| | ||||| || |||||||| ||| | | | |||||    
T  38948228 acacactttttaacacactctctttgatttgttagaattcatatggaacccatcaaaattatatcggacccatataatttggtgagactcgtataaattt 38948129  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatg 468  Q
    |||  ||| |||||   ||| ||||||||||||||||| ||||    
T  38948128 taattaataaaaaagaatgtattgaaaagtgtgtgttaaaatg 38948086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 39131616 - 39131588
Alignment:
Q  412 gggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||||||||||||||||||||||||    
T  39131616 gggacccatgtgaattttaaccaatcaaa 39131588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 488
Target Start/End: Original strand, 12731557 - 12731719
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    |||||||| |||||||| ||| ||| || |||||||||||| |||| ||||| | ||||||| ||| |||||||||||||||||| | | |||| |||||    
T  12731557 acacacttctcaacacattctctttgattggttaaaattcacatgagacccatcaaatttatttgggacccacatgatttggtggaagctatgtaaattt 12731656  T
Q  429 taaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||||||||   ||||||| ||| ||||||||| ||| ||||||| || |||||||||    
T  12731657 taaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtgttgctagcattcctct 12731719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 3150295 - 3150231
Alignment:
Q  379 cacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaat 443  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  3150295 caccaaatttatatggaatccacatgatttggtgggacccatgtgaattttaaccaattaaaaat 3150231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 1473689 - 1473593
Alignment:
Q  391 atggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattc 484  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||| ||| ||||||||||| || |||||    
T  1473689 atgggacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgttgctagcattc 1473593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 488
Target Start/End: Complemental strand, 28865484 - 28865384
Alignment:
Q  391 atggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||   | ||||  ||||||| ||||||||| |||||||||| ||||||||    
T  28865484 atgggacccacatgaattggtgggacccatgtgaattttaaccaataaaaaaaagtatgttagaaagtgtatgttacaatatgtgttgttagcattcctc 28865385  T
Q  488 t 488  Q
    |    
T  28865384 t 28865384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 478
Target Start/End: Original strand, 4032996 - 4033147
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtggga-----cccatgtgaatttt 429  Q
    ||||||||||||||| |||||| |||| ||||| | ||| || ||| | ||||||||||| |||||||| |||||||| ||     | | ||||||||||    
T  4032996 ttttcaacacactctctttaattggttgaaatttatatggaatccatcaaatttatatgggacccacataatttggtgagatgagactcgtgtgaatttt 4033095  T
Q  430 aaccaatcaaaaat---gtgttgaaaagtgtgtgttacaatgtgtgttgtta 478  Q
    ||||||||||| ||   || ||||||||||||||||| ||||||||||||||    
T  4033096 aaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgtgttgtta 4033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 6643367 - 6643429
Alignment:
Q  378 ccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||| ||||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  6643367 ccaccaaatttatatgggacccacatgatttggtgggacctatatgaattttaaccaatcaaa 6643429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 11650978 - 11650916
Alignment:
Q  376 acccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatca 438  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  11650978 acccaccaaatttatatgggacccacataatttggtgggatccatgtgaattttaaccaatca 11650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 475
Target Start/End: Complemental strand, 4483452 - 4483355
Alignment:
Q  379 cacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa-aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    |||| |||||||||||  |||||||||||||||||||||| | | ||||||||||||||||| |  |||||||||||||| ||||| ||||| |||||    
T  4483452 caccaaatttatatgggtcccacatgatttggtgggacccgtattaattttaaccaatcaaagagagtgttgaaaagtgtatgttaaaatgtatgttg 4483355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 441
Target Start/End: Complemental strand, 24784002 - 24783890
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattt 428  Q
    ||||| |||| |||||||| | ||| || | |||||||| | |||| | ||| | ||||||||||||| |||||||||||||||||| |||| |||||||    
T  24784002 acacattttttaacacactatctttgattgattaaaatttacatgagatccatcaaatttatatggaatccacatgatttggtgggatccatatgaattt 24783903  T
Q  429 taaccaatcaaaa 441  Q
    |||| ||||||||    
T  24783902 taacgaatcaaaa 24783890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 487
Target Start/End: Complemental strand, 5706751 - 5706595
Alignment:
Q  333 acttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaattt-atatggaacccacatgatttggtgggacccatgtgaattttaa 431  Q
    ||||||||||||||||| ||| || | |||||||| | |||  ||||| | || || |||||  || ||||||||||||||||| |||| ||||||||||    
T  5706751 acttttcaacacactctctttgattgattaaaatttacatgggacccatcaaaattgatatgagacgcacatgatttggtgggatccatatgaattttaa 5706652  T
Q  432 ccaat-caaaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctc 487  Q
    |||||  |||||  |||||||| || ||||||| || |||||||| || ||||||||    
T  5706651 ccaataaaaaaaaatgttgaaatgtatgtgttagaacgtgtgttgctagcattcctc 5706595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 488
Target Start/End: Original strand, 479812 - 479967
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||| ||||| | ||| || |||||||||||| ||  | |||||| |||||||||||  |||||||||||||||| ||| | | |||||||| ||||    
T  479812 ttttcaaaacactttatttgattggttaaaattcacattgatcccaccaaatttatatgg-ccccacatgatttggtgagactcgtatgaattttgacca 479910  T
Q  435 atcaa-aaatgtgttgaaaagtgtg--tgttacaatgtgtgttgttatcattcctct 488  Q
    || ||    ||||||||||||||||  ||||| ||||||||||| || |||||||||    
T  479911 ataaaggggtgtgttgaaaagtgtgtatgttaaaatgtgtgttgctagcattcctct 479967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 26328213 - 26328282
Alignment:
Q  378 ccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaatgtgt 447  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||||||||||| || |||| ||||| ||||    
T  26328213 ccaccaaatttatatgggacccacatgattcggtggaacccatgtgaatttcaatcaataaaaaaagtgt 26328282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 12424939 - 12425017
Alignment:
Q  411 tgggacccatgtgaattttaaccaatca--aaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||||||| |||||||||||  | ||||||||||||| |||  |||| |||||||||||||| |||||||||    
T  12424939 tgggacccatgtgaatgttaaccaatcaagagaatgtgttgaaaa-tgtaggttaaaatgtgtgttgttagcattcctct 12425017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 488
Target Start/End: Original strand, 5706699 - 5706784
Alignment:
Q  406 tttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||| |||| ||||||| |||||||| |||||||| |   ||||||||||||| ||||||| ||||||||||| ||||||| ||||    
T  5706699 tttgatgggtcccatgtaaattttaatcaatcaaagagagtgtgttgaaaagtatgtgttaaaatgtgtgttgctatcatttctct 5706784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 488
Target Start/End: Original strand, 31946914 - 31946983
Alignment:
Q  422 tgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||||| || |||||   ||||||||||||||||||||| ||||||||||| || |||||||||    
T  31946914 tgaattttaaccgataaaaaagtgtgtgttgaaaagtgtgtgttagaatgtgtgttgctagcattcctct 31946983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 457
Target Start/End: Original strand, 31945641 - 31945759
Alignment:
Q  340 aacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaa 439  Q
    |||||||||||||| || ||||| |||  | ||||  | |||| ||||||||||| | ||||||||||| || ||||   ||||||||||||||||||||    
T  31945641 aacacactctttttgattggttataatatacatgagtctcaccaaatttatatgggatccacatgattttgtaggacttgtgtgaattttaaccaatcaa 31945740  T
Q  440 a-aatgtgttgaaaagtgt 457  Q
    | | ||||||| |||||||    
T  31945741 atactgtgttggaaagtgt 31945759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 17600697 - 17600768
Alignment:
Q  418 catgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcct 486  Q
    ||||||| |||||||||||||||   ||| ||||||||| ||| ||||| |||||||||||||| |||||||    
T  17600697 catgtgagttttaaccaatcaaagagaatatgttgaaaaatgtttgttaaaatgtgtgttgttaacattcct 17600768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 9358299 - 9358244
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||||| ||||||||| |||| ||||| | |||||||||||||||||||||||    
T  9358299 aatttatatg-aacccacataatttagtgggtctcatgtgaattttaaccaatcaaa 9358244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 485
Target Start/End: Original strand, 9645010 - 9645079
Alignment:
Q  419 atgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcc 485  Q
    ||||||||||||||||||||||||   ||||||| ||||| ||||||| |||||| |||| || ||||||    
T  9645010 atgtgaattttaaccaatcaaaaagattgtgttggaaagtatgtgttagaatgtgggttgctagcattcc 9645079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 485
Target Start/End: Original strand, 9651027 - 9651096
Alignment:
Q  419 atgtgaattttaaccaatcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcc 485  Q
    ||||||||||||||||||||||||   ||||||| ||||| ||||||| |||||| |||| || ||||||    
T  9651027 atgtgaattttaaccaatcaaaaagattgtgttggaaagtatgtgttagaatgtgggttgctagcattcc 9651096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 475
Target Start/End: Complemental strand, 12731614 - 12731541
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttg 475  Q
    ||||| |||| | |||||||||||||||||||||||   |||||||||| |||||||| ||| ||| |||||||    
T  12731614 atttgatgggtctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatgtgttg 12731541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 12424935 - 12424886
Alignment:
Q  422 tgaattttaaccaatcaaaaa--tgtgttgaaaagtgtgtgttacaatgt 469  Q
    ||||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  12424935 tgaattttaaccaataaaaaaagtgtgttgaaaagtgtgtgttaaaatgt 12424886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 3625183 - 3625142
Alignment:
Q  399 cacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    |||||||||||||||||| ||||||||||||||  |||||||    
T  3625183 cacatgatttggtgggactcatgtgaattttaattaatcaaa 3625142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 31946954 - 31946914
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattca 369  Q
    |||||||||||||||||| |||||| || ||||||||||||    
T  31946954 acacacttttcaacacacacttttttatcggttaaaattca 31946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 31989192 - 31989248
Alignment:
Q  384 aatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaa 440  Q
    ||||||||| | |||||||||||||| ||||| ||||||  |||||||| |||||||    
T  31989192 aatttatattggacccacatgatttgttgggatccatgtatattttaacaaatcaaa 31989248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 433
Target Start/End: Complemental strand, 33182312 - 33182284
Alignment:
Q  405 atttggtgggacccatgtgaattttaacc 433  Q
    |||||||||||||||||||||||||||||    
T  33182312 atttggtgggacccatgtgaattttaacc 33182284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 488
Target Start/End: Original strand, 136353 - 136486
Alignment:
Q  358 ggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaa---tgtgttgaaaag 454  Q
    |||||||||||| ||||  |||| | |||||||||||  | ||||||||||| |||||| ||||||| |||||||||||||||||   |||||||||||     
T  136353 ggttaaaattcatatgagtcccatcaaatttatatgggtcacacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgtgttgaaaaa 136452  T
Q  455 tgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||||| ||||||| ||| || |||||||||    
T  136453 tgtgtgttaaaatgtgtattgctagcattcctct 136486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 335 - 488
Target Start/End: Original strand, 200967 - 201122
Alignment:
Q  335 ttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggacccatgtgaattttaacca 434  Q
    ||||||||||| |||| ||||| |||||||||||| ||   ||||||| |||| |||  || ||||| |||||| ||||||| ||||||||| ||||| |    
T  200967 ttttcaacacattcttcttaattggttaaaattcacattggacccaccaaattcatacaga-cccacctgatttagtgggacacatgtgaatcttaacaa 201065  T
Q  435 atcaaaaa---tgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||| |   |||||||| |||||||||||| ||||||| |||||| |||||||||    
T  201066 atcaaagagagtgtgttgataagtgtgtgttaaaatgtgtattgttagcattcctct 201122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 201018 - 200940
Alignment:
Q  405 atttggtgggacccatgtgaattttaaccaat---caaaaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatc 480  Q
    |||||||||| || ||||||||||||||||||    || ||||||||||||| | ||||||| ||||| ||| ||||||    
T  201018 atttggtgggtccaatgtgaattttaaccaattaagaagaatgtgttgaaaaatatgtgttaaaatgtttgtagttatc 200940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 8251 - 8344
Alignment:
Q  397 cccacatgatttggtgggacccatgtgaattttaaccaatcaaa---aatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||   |||| |||||||||||||||||| ||||| |||||||| |||||||||    
T  8251 cccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgtta-aatgtatgttgttagcattcctct 8344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 8316 - 8228
Alignment:
Q  329 acacacttttcaacacactctttttaatgggttaaaattcagatgaaacccacccaatttatatggaacccacatgatttggtgggaccc 418  Q
    |||||||||||||| || ||||||| || || ||||||||| ||||| |||| |||| |||| ||| |||||||||||||||||||||||    
T  8316 acacacttttcaacgcattctttttgattggctaaaattcacatgaatccca-ccaaattatgtgggacccacatgatttggtgggaccc 8228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 39282 - 39195
Alignment:
Q  402 atgatttggtgggacccatgtgaattttaaccaatcaa--aaatgtgttgaaaagtgtgtgttacaatgtgtgttgttatcattcctct 488  Q
    |||||||||| ||||| ||||||||||||| |||||||  | |||||||||||| | | | ||| |||||||||| ||| |||||||||    
T  39282 atgatttggtaggacc-atgtgaattttaatcaatcaaagatatgtgttgaaaaatatatattaaaatgtgtgttattagcattcctct 39195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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