View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13229_low_7 (Length: 262)
Name: NF13229_low_7
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 30730461 - 30730593
Alignment:
| Q |
12 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgagttgtatatctaaacggcaagaaaaatgaaataaatatgcatggttg-n |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30730461 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgatttgtatatctaaacggcaagaaaaatgaaatcaatatgcatggttgaa |
30730560 |
T |
|
| Q |
111 |
nnnnnnntagtataatgaaaagagaatatacaa |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30730561 |
aaaaaaatagtataatgaaaagagaatatacaa |
30730593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 30730612 - 30730690
Alignment:
| Q |
174 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttggagtcaaggtcattgacctgtgaagaagtaaatt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30730612 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttggagtcaaggtcattgacctgtgaagaagtaaatt |
30730690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University