View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13229_low_8 (Length: 254)
Name: NF13229_low_8
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41590747 - 41590511
Alignment:
| Q |
1 |
ttgtgaaggtctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttccttcacctcaaacagaaaatc |
100 |
Q |
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| T |
41590747 |
ttgtgaaggtctatgttggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacagaaaatc |
41590648 |
T |
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| Q |
101 |
actattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaagacctaaacccatttcccatgtgcctagaatgc |
200 |
Q |
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| T |
41590647 |
actattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaagacctaaacccatttcccatgtgcctagaatgc |
41590548 |
T |
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| Q |
201 |
caatgcatatatgtctctggcctctcaaccctatcac |
237 |
Q |
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| T |
41590547 |
caatgcatatatgtctctggcctctcaaccctatcac |
41590511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41571799 - 41571563
Alignment:
| Q |
1 |
ttgtgaaggtctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttccttcacctcaaacagaaaatc |
100 |
Q |
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| T |
41571799 |
ttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacagaaaatc |
41571700 |
T |
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| Q |
101 |
actattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaagacctaaacccatttcccatgtgcctagaatgc |
200 |
Q |
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| T |
41571699 |
actattatatgcatcatctctcaacttacacttcaatttatctataatctgcttatccaatttcaaagacttaaacccatttcccatgtgcctaaaatgc |
41571600 |
T |
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| Q |
201 |
caatgcatatatgtctctggcctctcaaccctatcac |
237 |
Q |
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| T |
41571599 |
cattgcctatatgtctctggcctctcaaccctatcac |
41571563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41558087 - 41557851
Alignment:
| Q |
1 |
ttgtgaaggtctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttccttcacctcaaacagaaaatc |
100 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
41558087 |
ttgtgaaggtctatgctggaacccaacatgaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaataaaaaatc |
41557988 |
T |
|
| Q |
101 |
actattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaagacctaaacccatttcccatgtgcctagaatgc |
200 |
Q |
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| T |
41557987 |
actattatatgcatcatttctcaacctacccttcaatttatctataatctgcttattcaatttcaaagacctaaacccatttcctatgtgcctagaatgc |
41557888 |
T |
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| Q |
201 |
caatgcatatatgtctctggcctctcaaccctatcac |
237 |
Q |
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|||||| | |||||||||||||||||||||||||||| |
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| T |
41557887 |
caatgcctgtatgtctctggcctctcaaccctatcac |
41557851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 41584217 - 41583980
Alignment:
| Q |
1 |
ttgtgaaggtctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttccttcacctcaaacagaaaatc |
100 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
41584217 |
ttgtgaaggtctatgctggaacccaacatgaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaataaaaaatc |
41584118 |
T |
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| Q |
101 |
actattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttc-aaagacctaaacccatttcccatgtgcctagaatg |
199 |
Q |
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||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||| |
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| T |
41584117 |
actattatatgcatcatttctcaacctacccttcaatttatctataatctgcttattcaatttcaaaagacctaaacccatttactatgtgcctagaatg |
41584018 |
T |
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| Q |
200 |
ccaatgcatatatgtctctggcctctcaaccctatcac |
237 |
Q |
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||||||| | |||||||||||||||||||||||||||| |
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| T |
41584017 |
ccaatgcctgtatgtctctggcctctcaaccctatcac |
41583980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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