View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13229_low_9 (Length: 238)
Name: NF13229_low_9
Description: NF13229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13229_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38029500 - 38029262
Alignment:
| Q |
1 |
tttcattatttgagctaacttttgaaagtgagatcaaattctatttaacgcgatattagtgtaatgttcatatgtacttggacaccttccacttatatgt |
100 |
Q |
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| T |
38029500 |
tttcattatttgagctaacttttgagagggagatccaatttcatttaaggcaatattagtgtaatgttcatatgtacttggacaccttcctcttatatgt |
38029401 |
T |
|
| Q |
101 |
atttaccgttttcattatttgagctaactttttgagagtcggaacgaagtccgtttaacaatccgaacaaaat---------atgttggtctcatttttt |
191 |
Q |
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| T |
38029400 |
atttaccgctttcattatttgagctaactttttgagagttagaaggaagtccgtttaacaatccgaacaaaatatgtaccatatgttggtctcatttttt |
38029301 |
T |
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| Q |
192 |
catacattattattttaatactatagaagttgatgatgt |
230 |
Q |
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| T |
38029300 |
catacattattattttaatactatagaagttgatgatgt |
38029262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 38029523 - 38029478
Alignment:
| Q |
87 |
ttccacttatatgtatttaccgttttcattatttgagctaactttt |
132 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
38029523 |
ttcctcttatatgcatttaccgctttcattatttgagctaactttt |
38029478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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