View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_high_14 (Length: 324)
Name: NF1322_high_14
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 49278513 - 49278282
Alignment:
| Q |
30 |
tattttaggattttccatatttttctccacacctccctgatatcctcctccgctcaaagatttggcttgttttcattcttgataaattcgggacaaactt |
129 |
Q |
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| T |
49278513 |
tattttaggattttccatatttttctccccacctccctgatatcctcc---gctcaaagatttggcttgttt-cattcttgataaattcgggataaactt |
49278418 |
T |
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| Q |
130 |
tgtcgctgtgtttagcatggctctacacgaaaatattatactaattgttacacgtgtgcaaaggacatgactcggaatgggtttgatgaatcaacattaa |
229 |
Q |
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| T |
49278417 |
cgtcgctgtgtttagcatggctctacacgaaaatattatactaattgttacacgtgtgcaaaggacatgactcggaatgggtttgatgaatcaacattaa |
49278318 |
T |
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| Q |
230 |
aacaagtattcaattaattttgacagggactgaaac |
265 |
Q |
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| T |
49278317 |
aacaagtattcaattaattttgacagggactaaaac |
49278282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 49278300 - 49278250
Alignment:
| Q |
266 |
ttttgacagggactgaaacaaaagaggaagaaaacattttgtcttcatctc |
316 |
Q |
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| T |
49278300 |
ttttgacagggactaaaacaaaagagaaagaaaacattttgtcttcatctc |
49278250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 31416024 - 31415992
Alignment:
| Q |
30 |
tattttaggattttccatatttttctccacacc |
62 |
Q |
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| T |
31416024 |
tattttaggattttccatatttttctccccacc |
31415992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 7938484 - 7938520
Alignment:
| Q |
30 |
tattttaggattttccatatttttctccacacctccc |
66 |
Q |
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| T |
7938484 |
tattttaggattttccatatttttctcccaacctccc |
7938520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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