View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_high_16 (Length: 310)
Name: NF1322_high_16
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 75 - 299
Target Start/End: Original strand, 14226069 - 14226293
Alignment:
| Q |
75 |
atgtaaacaaattgataataattttctatgaaagaaacatagcatcatttttattttctattccatatannnnnnnnatcattgttgattcatgtgactt |
174 |
Q |
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| T |
14226069 |
atgtaaacaaattgataataattttctatgaaagaaacatagcatcatttttattttctattccatatattttttttatcatcgttgattcatgtgactt |
14226168 |
T |
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| Q |
175 |
cagtttttgttggtaaatgagatatgatatgatataattgcatgctcctgactcatattacatcttacttcgcatagagtgcttcacaatacccggaaaa |
274 |
Q |
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| T |
14226169 |
cagtttttgttggtaaatgagatatgatatgatataattgcatgctcctgactcatattacatcttacttcgcatagagtgcttcacaatacccggaaaa |
14226268 |
T |
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| Q |
275 |
tgaacattcatcatgtagtccttcc |
299 |
Q |
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| T |
14226269 |
tgaacattcatcatgtagtccttcc |
14226293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 14220526 - 14220606
Alignment:
| Q |
219 |
ctcctgactcatattacatcttacttcgcatagagtgcttcacaatacccggaaaatgaacattcatcatgtagtccttcc |
299 |
Q |
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| T |
14220526 |
ctcctggcccatattacatcttacttcgcatagagtgcttcacaagacctggaaaatgaacgttcatcatgtagtccttcc |
14220606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 14218140 - 14218189
Alignment:
| Q |
152 |
atcattgttgattcatgtgacttcagtttttgttggtaaatgagatatga |
201 |
Q |
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| T |
14218140 |
atcattgttgattcacgtgtcttcagttttcgtgagtaaatgagatatga |
14218189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 14218091 - 14218127
Alignment:
| Q |
75 |
atgtaaacaaattgataataattttctatgaaagaaa |
111 |
Q |
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| T |
14218091 |
atgtaaacgaattgataataattttccatgaaagaaa |
14218127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 43953159 - 43953220
Alignment:
| Q |
10 |
aacaaaatgtaacaaatgtttatttggcggtgtcacaatcattgatgttgcatcccatggca |
71 |
Q |
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| T |
43953159 |
aacaaaatgtaacaaatgtttatttggcggtgtcacaatcattgatgttgcatcccatggca |
43953220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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