View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1322_high_19 (Length: 278)

Name: NF1322_high_19
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1322_high_19
NF1322_high_19
[»] chr7 (25 HSPs)
chr7 (40-250)||(9801602-9801812)
chr7 (93-250)||(9761161-9761316)
chr7 (40-147)||(20017130-20017237)
chr7 (40-148)||(29544696-29544805)
chr7 (67-140)||(315377-315450)
chr7 (58-147)||(21471991-21472079)
chr7 (40-136)||(21545668-21545765)
chr7 (40-116)||(23125077-23125154)
chr7 (40-144)||(7494873-7494977)
chr7 (67-146)||(7815527-7815606)
chr7 (40-123)||(10670429-10670512)
chr7 (52-147)||(20470640-20470735)
chr7 (40-156)||(7142275-7142391)
chr7 (53-147)||(2630307-2630401)
chr7 (53-123)||(22067657-22067727)
chr7 (40-84)||(9761309-9761353)
chr7 (53-140)||(7493503-7493590)
chr7 (55-114)||(18496757-18496816)
chr7 (59-121)||(9070584-9070646)
chr7 (54-114)||(1074644-1074704)
chr7 (53-136)||(20446392-20446475)
chr7 (77-114)||(4829002-4829039)
chr7 (53-114)||(8308899-8308960)
chr7 (77-114)||(24596867-24596904)
chr7 (59-123)||(7777895-7777959)
[»] scaffold0650 (1 HSPs)
scaffold0650 (40-156)||(5591-5707)
[»] chr5 (17 HSPs)
chr5 (40-157)||(26329890-26330007)
chr5 (40-146)||(17027704-17027810)
chr5 (55-140)||(30072308-30072393)
chr5 (54-146)||(24517537-24517629)
chr5 (45-157)||(24841935-24842047)
chr5 (57-140)||(16622514-16622596)
chr5 (41-114)||(19763749-19763823)
chr5 (53-112)||(18452677-18452736)
chr5 (53-148)||(22229994-22230089)
chr5 (40-126)||(25594544-25594630)
chr5 (54-149)||(25680778-25680873)
chr5 (54-112)||(16634238-16634296)
chr5 (54-123)||(11274184-11274253)
chr5 (43-114)||(23157667-23157739)
chr5 (53-112)||(7742735-7742794)
chr5 (57-109)||(22643773-22643825)
chr5 (82-140)||(17381878-17381936)
[»] chr8 (21 HSPs)
chr8 (53-149)||(16054484-16054580)
chr8 (40-124)||(28901203-28901287)
chr8 (40-149)||(11310085-11310193)
chr8 (54-149)||(28902280-28902375)
chr8 (54-149)||(16052105-16052200)
chr8 (43-122)||(22894387-22894466)
chr8 (40-112)||(32239464-32239537)
chr8 (53-149)||(13081763-13081859)
chr8 (40-114)||(30543937-30544013)
chr8 (54-123)||(5569994-5570063)
chr8 (59-149)||(24696778-24696869)
chr8 (54-140)||(24120415-24120501)
chr8 (60-149)||(29047169-29047258)
chr8 (67-114)||(12956685-12956733)
chr8 (55-114)||(28291964-28292023)
chr8 (40-114)||(30850963-30851038)
chr8 (68-126)||(14976963-14977021)
chr8 (40-114)||(27097665-27097738)
chr8 (53-106)||(14424684-14424737)
chr8 (53-114)||(29291960-29292021)
chr8 (40-111)||(6888059-6888131)
[»] chr4 (22 HSPs)
chr4 (40-172)||(47024571-47024703)
chr4 (40-148)||(12111157-12111265)
chr4 (44-172)||(18898163-18898291)
chr4 (55-126)||(17026548-17026619)
chr4 (60-140)||(1695684-1695764)
chr4 (44-156)||(34864117-34864229)
chr4 (54-149)||(15192394-15192489)
chr4 (58-149)||(27302972-27303063)
chr4 (55-149)||(5676392-5676486)
chr4 (41-143)||(10320055-10320157)
chr4 (40-114)||(19601975-19602049)
chr4 (82-148)||(51884821-51884887)
chr4 (53-114)||(31859764-31859825)
chr4 (55-147)||(5906593-5906685)
chr4 (53-115)||(9782847-9782908)
chr4 (40-112)||(17187349-17187422)
chr4 (55-140)||(25315069-25315154)
chr4 (67-114)||(23353822-23353869)
chr4 (40-114)||(21077409-21077484)
chr4 (53-88)||(46647385-46647420)
chr4 (53-114)||(33519220-33519281)
chr4 (61-109)||(4732954-4733002)
[»] chr1 (25 HSPs)
chr1 (40-174)||(26657653-26657787)
chr1 (41-123)||(30675662-30675744)
chr1 (40-140)||(9328344-9328444)
chr1 (40-144)||(9353189-9353293)
chr1 (53-148)||(12423744-12423839)
chr1 (54-140)||(11769831-11769917)
chr1 (53-147)||(30781950-30782044)
chr1 (53-148)||(50047365-50047460)
chr1 (71-149)||(23223622-23223700)
chr1 (54-140)||(23519606-23519692)
chr1 (40-119)||(52271103-52271183)
chr1 (54-109)||(25494357-25494412)
chr1 (40-114)||(26854183-26854258)
chr1 (40-141)||(9252446-9252547)
chr1 (54-123)||(18300857-18300926)
chr1 (54-113)||(25373937-25373996)
chr1 (52-114)||(25665633-25665695)
chr1 (77-114)||(23505970-23506007)
chr1 (40-136)||(25727751-25727847)
chr1 (40-136)||(25736159-25736255)
chr1 (59-114)||(19257669-19257724)
chr1 (53-114)||(15298734-15298794)
chr1 (58-123)||(23521573-23521638)
chr1 (37-149)||(25730400-25730512)
chr1 (82-114)||(25126699-25126731)
[»] chr6 (8 HSPs)
chr6 (54-147)||(17860279-17860372)
chr6 (40-112)||(26499712-26499785)
chr6 (53-120)||(15575114-15575181)
chr6 (40-126)||(30355493-30355580)
chr6 (40-114)||(24507306-24507380)
chr6 (61-122)||(15998708-15998769)
chr6 (35-102)||(33638257-33638325)
chr6 (40-101)||(33638381-33638443)
[»] scaffold0282 (1 HSPs)
scaffold0282 (40-148)||(22443-22551)
[»] chr3 (18 HSPs)
chr3 (54-149)||(18065987-18066083)
chr3 (53-146)||(25883293-25883386)
chr3 (57-149)||(10341981-10342073)
chr3 (53-149)||(11521355-11521451)
chr3 (59-140)||(1475117-1475198)
chr3 (87-149)||(27415391-27415453)
chr3 (43-114)||(18474349-18474421)
chr3 (43-114)||(19542987-19543059)
chr3 (71-147)||(21018085-21018161)
chr3 (58-149)||(16970657-16970747)
chr3 (40-114)||(19219074-19219149)
chr3 (40-158)||(33914387-33914505)
chr3 (40-157)||(13911434-13911550)
chr3 (43-114)||(5632406-5632477)
chr3 (40-112)||(19263769-19263845)
chr3 (61-146)||(2729454-2729541)
chr3 (66-114)||(8402414-8402462)
chr3 (56-104)||(26418913-26418961)
[»] chr2 (17 HSPs)
chr2 (54-173)||(27417067-27417186)
chr2 (53-146)||(16593582-16593675)
chr2 (53-146)||(25474227-25474320)
chr2 (80-174)||(19949328-19949422)
chr2 (53-141)||(30998961-30999049)
chr2 (55-114)||(18818894-18818953)
chr2 (60-147)||(35708000-35708087)
chr2 (71-124)||(15829339-15829392)
chr2 (40-113)||(17415028-17415101)
chr2 (54-113)||(18236167-18236226)
chr2 (53-112)||(22525685-22525744)
chr2 (54-116)||(21505000-21505062)
chr2 (59-147)||(1733287-1733375)
chr2 (40-106)||(14921910-14921977)
chr2 (40-111)||(24188146-24188217)
chr2 (77-114)||(34063704-34063741)
chr2 (54-118)||(19541228-19541291)
[»] scaffold0362 (1 HSPs)
scaffold0362 (54-147)||(7810-7903)
[»] scaffold0171 (2 HSPs)
scaffold0171 (40-124)||(21574-21659)
scaffold0171 (54-124)||(6386-6456)
[»] scaffold0386 (2 HSPs)
scaffold0386 (62-149)||(8537-8624)
scaffold0386 (59-145)||(11631-11717)
[»] scaffold0011 (1 HSPs)
scaffold0011 (40-114)||(228050-228124)
[»] scaffold0188 (1 HSPs)
scaffold0188 (40-123)||(26809-26893)
[»] scaffold0190 (1 HSPs)
scaffold0190 (41-111)||(11564-11635)
[»] scaffold0337 (1 HSPs)
scaffold0337 (40-114)||(1985-2059)
[»] scaffold1149 (1 HSPs)
scaffold1149 (54-114)||(1978-2038)
[»] scaffold0065 (1 HSPs)
scaffold0065 (40-114)||(12421-12495)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 9801812 - 9801602
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||    
T  9801812 atgaagattgaagtcaatggttcttaaaaggtttttaaagaaaatacaaagtgaggaaaatttatttcaagttcctaggagttttcaaatggaagaacga 9801713  T
Q  140 tcgaaaacggcagaaaaattcaaggattcgcacattttgagctgtcttgtgtgtgactcatgcctggctgagcatggctcccacccgaggaagtgaggct 239  Q
    ||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  9801712 tcgaaaacggctgaaaaactcaaggattcgcacattttgggctgtcttgtgtgtgactcatgcctggctgggcatggctcccacccttggaagtgaggct 9801613  T
Q  240 actactatggg 250  Q
    |||||||||||    
T  9801612 actactatggg 9801602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 9761316 - 9761161
Alignment:
Q  93 aagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacggcagaaaaattcaaggattcgcacattttgagctgtcttgtgtg 192  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||||  ||    
T  9761316 aagaaaattcatttcaagttcctaggagtttccaaatagaagaatgatcgaaaatggcagaaaaactcaaggattcgcacattttgggctgtcttg--tg 9761219  T
Q  193 tgactcatgcctggctgagcatggctcccacccgaggaagtgaggctactactatggg 250  Q
    ||||||| || |||||  ||||||||||||||||||||||||||||||||||||||||    
T  9761218 tgactcacgcttggctaggcatggctcccacccgaggaagtgaggctactactatggg 9761161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 20017130 - 20017237
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||| ||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||      
T  20017130 atgaagattgaactcaatggttcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttacaaacgaaagaacag 20017229  T
Q  140 tcgaaaac 147  Q
    ||||||||    
T  20017230 tcgaaaac 20017237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 29544696 - 29544805
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacg 138  Q
    ||||||||||||  |||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || | | |||||||    
T  29544696 atgaagattgaagatcaatgattcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacggaagaacg 29544795  T
Q  139 atcgaaaacg 148  Q
    ||| ||||||    
T  29544796 atcaaaaacg 29544805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 315377 - 315450
Alignment:
Q  67 aaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  315377 aaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagtttccagacgaaagaacgat 315450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 21471991 - 21472079
Alignment:
Q  58 ggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||||||| |||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| || | | ||||||||||||||||    
T  21471991 ggttcttagaaggttattgaagaaaatacaaagtgacgaaa-ttcatttcaagttcctaggagttttcatacggaagaacgatcgaaaac 21472079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 21545765 - 21545668
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaa 136  Q
    ||||||||||||  ||||||||||||| || || ||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  21545765 atgaagattgaagatcaatggttcttagaaagtatttgaagacaataaaaagtgaagaaaattcatttcaagtttctaggagtttccagacgaaagaa 21545668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 23125077 - 23125154
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttccta 116  Q
    |||||||||||| |||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||| ||||||    
T  23125077 atgaagattgaagttcaatggttcttataagattcttaaagacaatacaaagtgaagaaaattcatttcaaattccta 23125154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 7494873 - 7494977
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||| | ||||||||||| |||||   | |||| |||||||||||||||||||| |||||||| | ||||||||||||| | | ||||||||    
T  7494873 atgaagattgaagttaatggttcttagaaggtccatgaagacaatacaaagtgaagaaaatttatttcaagattctaggagtttccagacggaagaacga 7494972  T
Q  140 tcgaa 144  Q
    |||||    
T  7494973 tcgaa 7494977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 7815527 - 7815606
Alignment:
Q  67 aaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaa 146  Q
    |||||| || |||| |||||||||||||||||||||||||||||||| ||||||||| || | | |||||||||||||||    
T  7815527 aaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcataggagttttcagacggaagaacgatcgaaaa 7815606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 10670512 - 10670429
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||||||| ||| ||||||||||||| ||||||||  |||| ||||||||||||| |||| ||||||||||||| |||||||||    
T  10670512 atgaagatcgaagtcaatggttcttagaaggttttctaagacaatacaaagtgaataaaaatcatttcaagttcgtaggagttt 10670429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 20470735 - 20470640
Alignment:
Q  52 ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||||||||||||| |||||| || |||| |||||||| ||||||||||| ||||||||||| || ||||||||| |   ||||||||||||||||    
T  20470735 ttcaatggttcttagaaggttcttgaagacaatacaaaatgaagaaaattgatttcaagttcgtatgagtttccagacagaagaacgatcgaaaac 20470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 7142275 - 7142391
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||||||||||||| |||||| |||| |||||||| |||| |||||||| | |||||||| |||| |||||||||||||  |  || | | ||||||||    
T  7142275 atgaagattgaattcgatggtttttaataggtttttgaagagaatacaaattaaagaaaatccattgcaagttcctaggatatgtcagacggaagaacga 7142374  T
Q  140 tcgaaaacggcagaaaa 156  Q
    |||||||| | ||||||    
T  7142375 tcgaaaaccggagaaaa 7142391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 2630401 - 2630307
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||| |||||||||  |||| ||||||| |||| ||| |||||| |||| ||||||||||||||||||||| ||   ||||||||||||||||||    
T  2630401 tcaagggttcttaattggttgttaaagacaataaaaattgaagacaattaatttcaagttcctaggagttttcaggagaaagaacgatcgaaaac 2630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 22067727 - 22067657
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||| |||||||| |||||| || |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  22067727 tcaagggttcttagaaggttgttgaagacaatacaaagtgaaaagaattcatttcaagttcctaggagttt 22067657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 9761353 - 9761309
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaat 84  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  9761353 atgaagattgaagtcaatggttcttaaaaggtttttaaagaaaat 9761309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 7493503 - 7493590
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||| ||||||||||||||| || |||| |||||||| |||| |||||||||| ||| || |||||||||| |||| | |||||||||    
T  7493503 tcaagggttcttaaaaggttattgaagataatacaaaatgaaaaaaattcattccaaatttctaggagttttcaaagggaagaacgat 7493590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 18496757 - 18496816
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||| || ||| || ||||||||||||  ||||||||||||||||||||||||    
T  18496757 aatggttcttagaatgttgttgaagaaaatacaagatgaagaaaattcatttcaagttcc 18496816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 9070584 - 9070646
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagt 121  Q
    ||||||| ||||||||| |||| |||| ||||||||||| ||||| ||||||||| |||||||    
T  9070584 gttcttagaaggttttttaagacaatataaagtgaagaatattcagttcaagttcgtaggagt 9070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 1074644 - 1074704
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||||||||| || |||| |||||||  ||||||||| | ||||||||||||    
T  1074644 caatggttcttaaaaggttgttgaagacaatacaagatgaagaaaagtaatttcaagttcc 1074704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 20446392 - 20446475
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaa 136  Q
    |||| |||||||| |||||| || |||| ||||||||||||| |||| |||||| |||||| || |||| | |||||| |||||    
T  20446392 tcaagggttcttagaaggttgttgaagacaatacaaagtgaaaaaaaatcattttaagttcataagagtattcaaatggaagaa 20446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 4829002 - 4829039
Alignment:
Q  77 aagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  4829002 aagacaatacaaagtgaagataattcatttcaagttcc 4829039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 8308960 - 8308899
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||| ||||| ||| |||| |||||||| | ||||| |||||| |||||||||    
T  8308960 tcaatggttcttagaaggtctttgaagacaatacaaaataaagaagattcatatcaagttcc 8308899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 24596904 - 24596867
Alignment:
Q  77 aagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  24596904 aagacaatacaaagtgaagaaaattcatttgaagttcc 24596867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 7777959 - 7777895
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||||||||||||| || | || |||| ||||||||||||| ||||  |||||||||| ||||||    
T  7777959 gttcttaaaaggttgttgaggacaatataaagtgaagaaaaatcataccaagttcctaagagttt 7777895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 5707 - 5591
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||| || | | ||||||||    
T  5707 atgaagattgaattcaatggttcttagaaggtctttaaagaaaatacaaagtgaagaaaattcaattcaagtttgtaggagttttcagacggaagaacga 5608  T
Q  140 tcgaaaacggcagaaaa 156  Q
    |||||||| | ||||||    
T  5607 tcgaaaacaggagaaaa 5591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 26330007 - 26329890
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||| |||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || | | ||||||||    
T  26330007 atgaagattgaagtcaatggtccttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacggaagaacga 26329908  T
Q  140 tcgaaaacggcagaaaaa 157  Q
    || ||| ||| |||||||    
T  26329907 tcaaaagcgggagaaaaa 26329890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 17027704 - 17027810
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||| | |||| |||||| |||||| || |||| |||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||    
T  17027704 atgaagattgaagttaatgcttcttagaaggttcttgaagacaatacaaagtgaagaaaattaatttcaatttcctaggagtttccatacgaaagaacga 17027803  T
Q  140 tcgaaaa 146  Q
    |||||||    
T  17027804 tcgaaaa 17027810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 30072308 - 30072393
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||| | |||||||||    
T  30072308 aatggttcttaaaaggtttttaaagacaatacaaagtgaagaaatttcatttcaagttcgtatgcgtttccaaacggaagaacgat 30072393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 24517537 - 24517629
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaa 146  Q
    |||||||| | | ||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24517537 caatggttatcataaggttttttaagataatagaaagcgaagaaaattcatttcaagttcctaggagtttccagatgaaataacgatcgaaaa 24517629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 24841935 - 24842047
Alignment:
Q  45 gattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaa 144  Q
    ||||||| ||||||||||||| |||| |||| |||| || ||||| |||||||||||||||||| ||||||||||||||||| | || ||||||||  ||    
T  24841935 gattgaagtcaatggttcttagaaggattttgaagacaacacaaaatgaagaaaattcatttcatgttcctaggagtttccagacgacagaacgataaaa 24842034  T
Q  145 aacggcagaaaaa 157  Q
    ||||| |||||||    
T  24842035 aacggaagaaaaa 24842047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 16622596 - 16622514
Alignment:
Q  57 tggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    ||||||||| |||||||| || || |||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  16622596 tggttcttagaaggttttgaa-gacaatacaaattgaagaaaattcatttcaagttcgtaggagtttccagatggaagaacgat 16622514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 19763823 - 19763749
Alignment:
Q  41 tgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||||  |||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  19763823 tgaagattgaagatcaagggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttcc 19763749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 18452736 - 18452677
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    ||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||    
T  18452736 tcaatggttcttataaggttttttaaaacaatacaaagtgaagaaaattcatttcaagtt 18452677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 22229994 - 22230089
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacg 148  Q
    |||| |||||||| |||||| || |||| ||||| ||||||||||||  ||| |||||||||||||||||| || | | |||||||||||||||||    
T  22229994 tcaagggttcttagaaggttgttgaagataataccaagtgaagaaaacacatctcaagttcctaggagttttcagacggaagaacgatcgaaaacg 22230089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 25594630 - 25594544
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttcca 126  Q
    ||||||||||||| ||||||| | ||| |||||||||  ||| ||| |||||||||||||||||| ||||||||||||||||||||||    
T  25594630 atgaagattgaatatcaatggatattagaaggtttttgtagataatgcaaagtgaagaaaattca-ttcaagttcctaggagtttcca 25594544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 25680778 - 25680873
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||| ||||||| ||||||||  || | |||||||||| |||||||||||||||| ||| ||||||||||||| | | || ||| |||||||||||    
T  25680778 caatagttcttagaaggttttagaaaacaatacaaagtaaagaaaattcatttcaggtttctaggagtttccagacggaaaaacaatcgaaaacgg 25680873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 16634238 - 16634296
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    |||||||||||| ||||||||| ||||||||||||  |||| |||||||||||||||||    
T  16634238 caatggttcttagaaggtttttgaagaaaatacaagatgaaaaaaattcatttcaagtt 16634296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 11274253 - 11274184
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||||||||||| ||||| ||| |||| |||||||  ||| |||| ||||||||||||||||||||||||    
T  11274253 caatggttcttagaaggtctttgaagacaatacaagatgatgaaatttcatttcaagttcctaggagttt 11274184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 23157739 - 23157667
Alignment:
Q  43 aagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||| |||||||||||||| ||||| |||||||| || | |||||||||||| ||||||| |||||||    
T  23157739 aagattgaagttcaatggttcttataaggtatttaaagacaacagaaagtgaagaaagttcatttaaagttcc 23157667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 7742794 - 7742735
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    ||||||||||||| ||||| ||| |||| |||||||||||||||||| || |||||||||    
T  7742794 tcaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaaatcgtttcaagtt 7742735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 22643825 - 22643773
Alignment:
Q  57 tggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaa 109  Q
    ||||||||||||||| ||| || | |||||||| |||||||||||||||||||    
T  22643825 tggttcttaaaaggtatttgaatacaatacaaactgaagaaaattcatttcaa 22643773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 17381936 - 17381878
Alignment:
Q  82 aatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||||  |||||||| |||||||||||||||||| ||||| |||||  |||||||||    
T  17381936 aatacaagatgaagaaagttcatttcaagttcctagaagttttcaaatataagaacgat 17381878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 16054484 - 16054580
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  16054484 tcaagggttcttagaaggttgttgaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccagacaaaagaacgatcgaaaacgg 16054580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 28901287 - 28901203
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttc 124  Q
    |||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  28901287 atgaagattgaattcaatggttcttataaggtttctgaagacaatacaaagtgaagaaaattcatttcaagctcctaggagtttc 28901203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 11310193 - 11310085
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||||||| || |||||| |||||| ||||||||| || | |||||||||||||||||||| |||||||||||||||||||||| | | | ||||||||    
T  11310193 atgaagatttaagtcaatgattcttagaaggtttttgaaaacaatacaaagtgaagaaaatt-atttcaagttcctaggagtttctagacggaagaacga 11310095  T
Q  140 tcgaaaacgg 149  Q
    ||||||||||    
T  11310094 tcgaaaacgg 11310085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 28902280 - 28902375
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||||||||| |||||| || |||| ||||||||||||| ||||||||||| |||||||||||||||| || | ||||||||||| ||||||||    
T  28902280 caatggttcttagaaggttattgaagacaatacaaagtgaataaaattcattttaagttcctaggagttttcagacgaaagaacgattgaaaacgg 28902375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 16052200 - 16052105
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    ||||| |||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||| | | | |||||| |||||||||||    
T  16052200 caatgattcttagaaggtttttgaagacaatacaaaatgaagaaaattcatttcaagttccttggagtttctagacggaagaacaatcgaaaacgg 16052105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 22894466 - 22894387
Alignment:
Q  43 aagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtt 122  Q
    ||||||||||||||| ||||||| | ||||||| |||| ||||||||||||||||||||| ||| ||||||| |||||||    
T  22894466 aagattgaattcaattgttcttagatggtttttgaagacaatacaaagtgaagaaaattcttttgaagttccaaggagtt 22894387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 32239464 - 32239537
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    |||||||||||| |||||||||| ||| |||||| ||||||| |||| ||||||||||||||||||||||||||    
T  32239464 atgaagattgaagttcaatggtttttataaggttcttaaagacaataaaaagtgaagaaaattcatttcaagtt 32239537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 13081859 - 13081763
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||| |||||||| |||||| || |||| |||||||| |||||||||||||||||||||| ||| ||||||| | |  ||||||||||| |||||||    
T  13081859 tcaagggttcttagaaggttgttgaagacaatacaaaatgaagaaaattcatttcaagtttctatgagtttctagacaaaagaacgatcaaaaacgg 13081763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 30543937 - 30544013
Alignment:
Q  40 atgaagattgaa-ttcaatggttctt-aaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||||| ||||||||||||| ||||| | |||||||| |||| ||||||||||||||||||||||||||||    
T  30543937 atgaagattgaagttcaatggttctttaaaagatatttaaagacaatataaagtgaagaaaattcatttcaagttcc 30544013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 5570063 - 5569994
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||||||||||| ||| |||||||||| |||||||  ||||||||||||||||||| ||| |||||||||    
T  5570063 caatggttcttagaagctttttaaagacaatacaagatgaagaaaattcatttcaacttcataggagttt 5569994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 24696778 - 24696869
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaa-ttcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    ||||||| ||||||||| ||||||||||||||| || |||| ||||||||||||| |||||| |||| | | | || |||||||||||||||    
T  24696778 gttcttagaaggtttttgaagaaaatacaaagtaaaaaaaaattcatttcaagtttctaggattttctagacggaaaaacgatcgaaaacgg 24696869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 24120415 - 24120501
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    ||||| |||||| ||||||||  |||| |||| ||  ||||||||||||||||||||||||||||| |||||| | | |||||||||    
T  24120415 caatgtttcttagaaggttttcgaagataataaaagatgaagaaaattcatttcaagttcctaggaatttccagacggaagaacgat 24120501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 29047258 - 29047169
Alignment:
Q  60 ttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||| ||||||||| |||| ||| |||| |||||||||  || |  ||||||||| ||||||||||   |||||||||||||||||||    
T  29047258 ttcttataaggtttttgaagacaatgcaaaatgaagaaaaaccaatctaagttcctatgagtttccaagcaaaagaacgatcgaaaacgg 29047169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 12956685 - 12956733
Alignment:
Q  67 aaggtttttaaagaaaatacaaagtgaaga-aaattcatttcaagttcc 114  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  12956685 aaggttttttaagataatacaaagtgaagagaaattcatttcaagttcc 12956733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 28292023 - 28291964
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||| ||||| ||| |||| |||||||| ||||||||||  ||||||||||||    
T  28292023 aatggttcttagaaggtctttgaagacaatacaaaatgaagaaaataaatttcaagttcc 28291964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 30851038 - 30850963
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||  |||| |||||||| || || ||| || | |||||||||||||||||||| ||||||||||||    
T  30851038 atgaagattgaagatcaacggttcttagaatgtctttgaatataatacaaagtgaagaaaattaatttcaagttcc 30850963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 14977021 - 14976963
Alignment:
Q  68 aggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttcca 126  Q
    |||||||| |||| |||||||||||| ||||||| |||||||| | |||| ||||||||    
T  14977021 aggtttttgaagataatacaaagtgatgaaaattaatttcaagcttctagaagtttcca 14976963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 27097738 - 27097665
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||||||  ||| ||||||| ||||| ||| |||| |||||||  ||||||||||||| ||||||||||    
T  27097738 atgaagattgaatg-aatagttcttagaaggtctttgaagacaatacaagttgaagaaaattcaattcaagttcc 27097665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 14424737 - 14424684
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcattt 106  Q
    ||||||||||||| ||||||||| || | ||| ||| |||||||||||||||||    
T  14424737 tcaatggttcttagaaggtttttgaacacaattcaatgtgaagaaaattcattt 14424684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 29291960 - 29292021
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||| ||||| ||| |||| || | |||||||| |||||||||||||| ||||    
T  29291960 tcaatggttcttagaaggtctttgaagacaacagaaagtgaaaaaaattcatttcaaattcc 29292021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 6888131 - 6888059
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagt 111  Q
    ||||||||||||  |||||||||||||||| || ||| |||| |||||||  |||||||||| | ||||||||    
T  6888131 atgaagattgaagatcaatggttcttaaaatgtctttgaagacaatacaagttgaagaaaatccgtttcaagt 6888059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 47024703 - 47024571
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||| ||||||||||||| ||||||||| || | | ||||||||||||| |||| ||||||||||||||||||||| || ||| ||||||||    
T  47024703 atgaagattgaagtcaatggttcttagaaggtttttgaaaacagtacaaagtgaagagaatttatttcaagttcctaggagttttcagatggaagaacga 47024604  T
Q  140 tcgaaaacggcagaaaaattcaaggattcgcac 172  Q
    |||||||| |  ||||||| |||| ||||||||    
T  47024603 tcgaaaacagaggaaaaatgcaagaattcgcac 47024571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 12111265 - 12111157
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||| |||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||   ||||| ||    
T  12111265 atgaatattgaagtcaatggttcttataaggttttttaagataatacaaagtgaagaaaattcatttcaagtttctaggagttttcaaacagaagaatga 12111166  T
Q  140 tcgaaaacg 148  Q
    |||||||||    
T  12111165 tcgaaaacg 12111157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 18898163 - 18898291
Alignment:
Q  44 agattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcga 143  Q
    |||||||| ||| ||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||| ||| || | | ||||||||||||    
T  18898163 agattgaagtcagtggttcttaaaaggtttttgaatacaatacaaagtaaagaaaattcatttcaagttcctaggatttttcagacgtaagaacgatcga 18898262  T
Q  144 aaacggcagaaaaattcaaggattcgcac 172  Q
    |||||  |||||||| |||| ||| ||||    
T  18898263 aaacgagagaaaaatgcaagaatttgcac 18898291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 17026619 - 17026548
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttcca 126  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  17026619 aatggttcttaaaaagtttttgaagacaatacaaagtgaagaaaattaatttcaagttcctaggagtttcca 17026548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 1695764 - 1695684
Alignment:
Q  60 ttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||| |||||| || |||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  1695764 ttcttagaaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagtttacaaacgaaagaacgat 1695684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 34864229 - 34864117
Alignment:
Q  44 agattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcga 143  Q
    |||||||| ||||||||||||| |||||||||  ||| |||||||| |||||||||||||||| |||||||||| ||||| || ||| || || ||||||    
T  34864229 agattgaagtcaatggttcttagaaggtttttgtagacaatacaaaatgaagaaaattcatttaaagttcctagaagttttcagatggaaaaatgatcga 34864130  T
Q  144 aaacggcagaaaa 156  Q
    |||| | ||||||    
T  34864129 aaacaggagaaaa 34864117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 15192394 - 15192489
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||||||||| |||||| || |||| ||| ||||||||||| ||||||||||||||||||||||||||  | | | ||||||||||||||||||    
T  15192394 caatggttcttagaaggttgttgaagacaattcaaagtgaagacaattcatttcaagttcctaggagtttttagacggaagaacgatcgaaaacgg 15192489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 27302972 - 27303063
Alignment:
Q  58 ggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||||| ||||||||| |||| | || |||||||||||||||||||| |||||||||||||||| || | | ||||||||||||||||||    
T  27302972 ggttcttagaaggtttttgaagacattataaagtgaagaaaattcattttaagttcctaggagttttcagacggaagaacgatcgaaaacgg 27303063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 5676392 - 5676486
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||| |||||| ||||||||| |||| |||||||  ||||||||||||||||| |||| ||||||||||| | | | |||||| |||||||||||    
T  5676392 aatgattcttagaaggtttttgaagacaatacaagatgaagaaaattcatttcgagttactaggagtttctagacggaagaacaatcgaaaacgg 5676486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 10320157 - 10320055
Alignment:
Q  41 tgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||| |||||| | ||||||| ||| ||||| ||  || | |||||||||||||||||||| |||||||||||||||||||||||| | |  ||||||||    
T  10320157 tgaaaattgaagttaatggttgttagaaggtcttcgaaaacaatacaaagtgaagaaaatttatttcaagttcctaggagtttccagaaggtagaacgat 10320058  T
Q  141 cga 143  Q
    |||    
T  10320057 cga 10320055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 19601975 - 19602049
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||| |||||||  |||||||||||||||||||||| |||| |||| |||||| ||||||||||||||| |||||    
T  19601975 atgatgattgaagacaatggttcttaaaaggtttttgaagacaataaaaagtggagaaaattcatttcatgttcc 19602049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 51884821 - 51884887
Alignment:
Q  82 aatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacg 148  Q
    |||||||||||||||||||| |||||||||||||| |||||| || | | |||||||||||||||||    
T  51884821 aatacaaagtgaagaaaattaatttcaagttcctatgagttttcagacggaagaacgatcgaaaacg 51884887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 31859825 - 31859764
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||| ||||| ||| |||| |||||||||||||||||||| ||||||||||||    
T  31859825 tcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttcc 31859764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 5906685 - 5906593
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    ||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||| ||  | |||||| |   ||||||||||||||||    
T  5906685 aatggttcttagaaggtttttgaagataatacaaagttaagaaaattcatttcaaattcataaaaatttccagacagaagaacgatcgaaaac 5906593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 9782908 - 9782847
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcct 115  Q
    |||| |||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  9782908 tcaagggttcttagaaggttgttaaa-aaaatgcaaagtgaagaaaattcatttcaagttcct 9782847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 17187349 - 17187422
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    |||||||||||| |||| ||||||||| ||| | ||| |||| |||||||||| ||||||||||||||||||||    
T  17187349 atgaagattgaagttcagtggttcttagaagttatttgaagacaatacaaagtaaagaaaattcatttcaagtt 17187422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 25315154 - 25315069
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||||||||||| ||| || |||| |||||||  | ||| |||||||||||||||||||| ||||||||| | | |||||||||    
T  25315154 aatggttcttaaaatgttgttgaagacaatacaagataaagtaaattcatttcaagttcctaagagtttccatacggaagaacgat 25315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 23353822 - 23353869
Alignment:
Q  67 aaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  23353822 aaggtcttttaagacaatacaaagtgaagaaaattcatttcaagttcc 23353869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 21077409 - 21077484
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||| |||||||| ||||||||||||| |||||  |  |||| |||||||| |||| |||||||||||||||||||    
T  21077409 atgaggattgaatatcaatggttcttagaaggtaatcgaagacaatacaaattgaataaaattcatttcaagttcc 21077484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 46647385 - 46647420
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaa 88  Q
    |||||||||||||||||||||||||||| |||||||    
T  46647385 tcaatggttcttaaaaggtttttaaagataatacaa 46647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 33519220 - 33519281
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||| ||||||| ||||| ||| |||| |||||||  ||||||||||||||||||| ||||    
T  33519220 tcaatcgttcttagaaggtctttgaagacaatacaagttgaagaaaattcatttcaaattcc 33519281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 4732954 - 4733002
Alignment:
Q  61 tcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaa 109  Q
    ||||| ||||| |||||||| |||||||  |||||||||||||||||||    
T  4732954 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaa 4733002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 26657653 - 26657787
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||| || ||| ||||| ||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| || | ||||||| ||    
T  26657653 atgaaaatcgaagtcaatagttcttataaggtttttgaagacaaaacaaagtgaagaaaattcatttcaagttcctaggagttttcagacgaaagaatga 26657752  T
Q  140 tcgaaaacggcagaaaaattcaaggattcgcacat 174  Q
    |||||||||| |||||||   ||| ||||||||||    
T  26657753 tcgaaaacgggagaaaaacgtaagaattcgcacat 26657787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 30675662 - 30675744
Alignment:
Q  41 tgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    ||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  30675662 tgaagattgaaatcaatggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttcctaggagttt 30675744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 9328344 - 9328444
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| ||||||||    
T  9328344 atgaagattgaattcaatcgttcttagaaggtttttgaagacaatactaagtgaagaaaattcagtccaagttcctaggagtttccatatggaagaacga 9328443  T
Q  140 t 140  Q
    |    
T  9328444 t 9328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 9353189 - 9353293
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||||||||||||||||  |||||| ||||||||| |||||||||| |||||||||||||||| | |||||||||| ||||||||| ||| ||||||||    
T  9353189 atgaagattgaattcaatcattcttagaaggtttttgaagaaaatactaagtgaagaaaattcagtccaagttcctatgagtttccatatggaagaacga 9353288  T
Q  140 tcgaa 144  Q
    |||||    
T  9353289 tcgaa 9353293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 12423839 - 12423744
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacg 148  Q
    |||| |||||||| |||||| || |||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  12423839 tcaaaggttcttagaaggttgttgaagacaatacaaagtgaaggaaattcatttcaagttcctaggagttttcaaacgaaagaacgattgaaaacg 12423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 11769917 - 11769831
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||    
T  11769917 caatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctatgagtttccagacggaagaacgat 11769831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 30781950 - 30782044
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||| ||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||||| |||| ||    |||||||||||||||||    
T  30781950 tcaagggttcttaaaaggttgttgaagacaatacaaagtgaagaaaattgatttcaagttcctaggtgttttcaggcaaaagaacgatcgaaaac 30782044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 50047365 - 50047460
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacg 148  Q
    |||||||| ||||||||||| || |||| |||||||| |||||||||||||||| |||||||||||||||| | ||   ||||||||| |||||||    
T  50047365 tcaatggtacttaaaaggttattgaagacaatacaaaatgaagaaaattcattttaagttcctaggagttttcgaacagaagaacgatagaaaacg 50047460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 23223622 - 23223700
Alignment:
Q  71 tttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||  ||  ||||||||||||||||    
T  23223622 tttttgaagacaatacaaagtgaaaaaaattcatttcaagttcctaggagtttctaatcgattgaacgatcgaaaacgg 23223700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 23519692 - 23519606
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    |||||||||||| |||||| || |||| |||| ||||||||||||||| ||||||||||||||||||||| || | | |||||||||    
T  23519692 caatggttcttagaaggttgttgaagacaatagaaagtgaagaaaatttatttcaagttcctaggagttttcagacggaagaacgat 23519606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 52271183 - 52271103
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctagga 119  Q
    |||||||||||| ||||||||| |||| ||||| ||| |||| |||||||||||||||||||||||||||| |||| ||||    
T  52271183 atgaagattgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaaattccaagga 52271103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 25494412 - 25494357
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaa 109  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  25494412 caatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaa 25494357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 26854258 - 26854183
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||||| |||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||| |||||||    
T  26854258 atgaagattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttcc 26854183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 9252547 - 9252446
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||||||| || | ||||||| ||| ||||||||| |||| ||||| |||||||||||||||| | |||||||||| |||||| || ||  ||||||||    
T  9252547 atgaagatttaactgaatggttattagaaggtttttgaagacaatactaagtgaagaaaattcagtccaagttcctatgagttttcagattgaagaacga 9252448  T
Q  140 tc 141  Q
    ||    
T  9252447 tc 9252446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 18300926 - 18300857
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||||||||||| ||||||||| |||| |||||| ||||||||||| | ||||||| |||||||||||||    
T  18300926 caatggttcttagaaggtttttgaagacaatacagagtgaagaaaaattatttcaaattcctaggagttt 18300857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 25373937 - 25373996
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttc 113  Q
    |||||||||||| |||||| || |||| |||||||  |||||||||||||||||||||||    
T  25373937 caatggttcttagaaggttgtttaagacaatacaagatgaagaaaattcatttcaagttc 25373996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 25665695 - 25665633
Alignment:
Q  52 ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||||||| ||  | |||||||| |||||||||||||||||| |||||| |||||||    
T  25665695 ttcaatggttcttataaaatatttaaagacaatacaaagtgaagaaaaatcatttgaagttcc 25665633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 23505970 - 23506007
Alignment:
Q  77 aagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||| |||||||||||||||||||||||||||||||||    
T  23505970 aagacaatacaaagtgaagaaaattcatttcaagttcc 23506007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 25727847 - 25727751
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaa 136  Q
    ||||||||||||  ||||||||||||  ||||||||| |||| ||| |||||||||| |||||  ||| |||||||||| |||||||| ||| |||||    
T  25727847 atgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaag-aaatttttttgaagttcctagaagtttccagatggaagaa 25727751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 25736255 - 25736159
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaa 136  Q
    ||||||||||||  ||||||||||||  ||||||||| |||| ||| |||||||||| |||||  ||| |||||||||| |||||||| ||| |||||    
T  25736255 atgaagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaag-aaatttttttgaagttcctagaagtttccagatggaagaa 25736159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 19257724 - 19257669
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||| ||||| ||| |||| |||||||||||||||||||| ||||||| ||||    
T  19257724 gttcttagaaggtctttgaagacaatacaaagtgaagaaaatttatttcaatttcc 19257669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 15298794 - 15298734
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||||||| | ||| ||| || ||||| ||||| |||||||||||||||||||    
T  15298794 tcaatggttcttaaaagttatttgaagcaa-tacaatgtgaataaaattcatttcaagttcc 15298734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 23521638 - 23521573
Alignment:
Q  58 ggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    |||||||| |||||| || |||| |||| ||||||||| ||| | || ||||||||||||||||||    
T  23521638 ggttcttagaaggttcttgaagacaatagaaagtgaagtaaaattatatcaagttcctaggagttt 23521573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 25730512 - 25730400
Alignment:
Q  37 gagatgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaaga 135  Q
    |||||||||||| ||  ||||||||||||  ||||||||| | || |||  |||||||||||||||| ||| || ||||||| ||||| |  ||| ||||    
T  25730512 gagatgaagatttaagatcaatggttcttggaaggtttttgacgacaatcgaaagtgaagaaaattc-tttaaaattcctagaagtttacggatggaaga 25730414  T
Q  136 acgatcgaaaacgg 149  Q
    || |||||||||||    
T  25730413 acaatcgaaaacgg 25730400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 25126699 - 25126731
Alignment:
Q  82 aatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||| ||||||||||||||||||||||||    
T  25126699 aatacaaaatgaagaaaattcatttcaagttcc 25126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 17860372 - 17860279
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||    
T  17860372 caatggttcttagaaggtttttgtagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttccagtcgaaagaacgattgaaaac 17860279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 26499785 - 26499712
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    ||||||||||||  ||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||||    
T  26499785 atgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtt 26499712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 15575114 - 15575181
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggag 120  Q
    |||| |||||||| |||||  || |||| |||||||||||||||||||||||||||||||||||||||    
T  15575114 tcaagggttcttagaaggtcgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggag 15575181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 30355493 - 30355580
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttcca 126  Q
    ||||||||||||  ||||| ||||||| ||||||||| |||| |||| |||||||| ||||||||||||||||||  |||||||||||    
T  30355493 atgaagattgaagatcaatcgttcttagaaggtttttgaagacaataaaaagtgaataaaattcatttcaagttcacaggagtttcca 30355580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 24507380 - 24507306
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||  |||||||| ||| ||| ||| | ||||||||||||||||||||||||| ||||||||||||    
T  24507380 atgaagattgaagacaatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttcc 24507306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 15998708 - 15998769
Alignment:
Q  61 tcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtt 122  Q
    ||||| |||||| ||  ||| |||||||||||||| ||||||||||||||||||||||||||    
T  15998708 tcttagaaggttgttgtagacaatacaaagtgaagcaaattcatttcaagttcctaggagtt 15998769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 33638257 - 33638325
Alignment:
Q  35 gtgagatgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattc 102  Q
    |||| ||||||||||||  ||||||||||||| ||||| ||| |||| ||||||||||||| |||||||    
T  33638257 gtgatatgaagattgaagatcaatggttcttataaggtctttgaagataatacaaagtgaataaaattc 33638325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 33638443 - 33638381
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaatt 101  Q
    ||||||||||||  ||||||||||||| ||||| ||| |||| ||||||||||||| ||||||    
T  33638443 atgaagattgaagatcaatggttcttataaggtctttgaagataatacaaagtgaataaaatt 33638381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 22551 - 22443
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||||| |||| |||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||| | | ||||||||    
T  22551 atgaagaatgaagtcaatggttcatagaaggttttttaagacaatacaaggtgaagaaaattcatttcaagttcctaggattttccagagggaagaacga 22452  T
Q  140 tcgaaaacg 148  Q
    | |||||||    
T  22451 ttgaaaacg 22443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 18065987 - 18066083
Alignment:
Q  54 caatggttctta-aaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||| |||||    
T  18065987 caatggttcttagaaagttttttgaagaaaatacaaagtgaagaaaattcatttcaacttcctaggagtttccaaaccaaagaacgctcgagaacgg 18066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 25883293 - 25883386
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaa 146  Q
    |||| |||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||    
T  25883293 tcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacgaaagaacaatcgaaaa 25883386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 10341981 - 10342073
Alignment:
Q  57 tggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    ||||||||| ||||||||| |||| ||||||||||||  |||| |||||||||||||||||||||||| | | | ||||||||||||||||||    
T  10341981 tggttcttagaaggtttttgaagacaatacaaagtgagaaaaactcatttcaagttcctaggagtttctagacggaagaacgatcgaaaacgg 10342073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 11521355 - 11521451
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||| |||| ||| |||||| || |||| ||||||||| |||||||||||||||||||||||||||||||| || | | ||||||||||||||||||    
T  11521355 tcaagggttgttagaaggttgttgaagataatacaaagcgaagaaaattcatttcaagttcctaggagttttcagacggaagaacgatcgaaaacgg 11521451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 1475198 - 1475117
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgat 140  Q
    ||||||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||||||| || | |||||||||||    
T  1475198 gttcttagaaggttattgaagataatacaaagtgaagaaaatttatttcaagttcctaggagttttcagacgaaagaacgat 1475117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 27415391 - 27415453
Alignment:
Q  87 aaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    ||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||    
T  27415391 aaagtgaagaaaattcatttcaacttcctaggagtttcaagacgaaagaacgatcgaaaacgg 27415453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 18474349 - 18474421
Alignment:
Q  43 aagattgaatt-caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||| ||||||| |||| ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  18474349 aagattgaatttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttcc 18474421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 19543059 - 19542987
Alignment:
Q  43 aagattgaatt-caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||| |||| ||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  19543059 aagattgaatttcaatagttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttcc 19542987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 21018085 - 21018161
Alignment:
Q  71 tttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||| |||||||||| |||||    
T  21018085 tttttgaagataatacaaaatgaaggaaattcatttcaagttcctaggaatttacaaatggaagaacgatcaaaaac 21018161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 16970657 - 16970747
Alignment:
Q  58 ggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||||| ||||||||| ||||||||||||  ||||||||||| | || |||||||||| |||||||| |  |||||||||||||||||||    
T  16970657 ggttcttagaaggtttttgaagaaaatacaagatgaagaaaattta-ttgaagttcctagcagtttccagacaaaagaacgatcgaaaacgg 16970747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 19219149 - 19219074
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||  ||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||| ||||    
T  19219149 atgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtgaataaaattcatttcaaattcc 19219074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 33914505 - 33914387
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    |||||| ||||||||||||||| | | |||  |||| |||| ||| |||||| | |||||||||||||| | || || ||||||||| | | ||||||||    
T  33914505 atgaaggttgaattcaatggttttaagaagaattttgaagataattcaaagtaaggaaaattcatttcaggctcttatgagtttccatacggaagaacga 33914406  T
Q  140 tcgaaaacggcagaaaaat 158  Q
    |||||||||| || |||||    
T  33914405 tcgaaaacgggaggaaaat 33914387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 13911434 - 13911550
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacga 139  Q
    ||||||||| |||| ||||||||||| |||  |||| |||| ||||| |  | |||||| ||||||||| ||||| ||||||||||||||| |||||| |    
T  13911434 atgaagattaaattaaatggttcttagaagaattttcaagacaatacgatctaaagaaa-ttcatttcatgttccaaggagtttccaaatggaagaacaa 13911532  T
Q  140 tcgaaaacggcagaaaaa 157  Q
    | |||||||  |||||||    
T  13911533 ttgaaaacgtgagaaaaa 13911550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 5632477 - 5632406
Alignment:
Q  43 aagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||  ||| |||||||| ||||| ||| |||| |||| ||| ||||||||||||||||||||||||    
T  5632477 aagattgaagacaacggttcttataaggtatttgaagataataaaaattgaagaaaattcatttcaagttcc 5632406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 19263845 - 19263769
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggttttta---aagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    ||||||||||||  |||||||||| || |||||||||    |||| |||||||||||||||||||||||||||||||    
T  19263845 atgaagattgaagatcaatggttcatagaaggtttttttttaagacaatacaaagtgaagaaaattcatttcaagtt 19263769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 2729541 - 2729454
Alignment:
Q  61 tcttaaaaggttttta--aagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaa 146  Q
    |||||||||||||||   |||| ||||||||||||| |||| ||||||||||||| ||||||  |  | ||| |||||||||||||||    
T  2729541 tcttaaaaggttttttttaagacaatacaaagtgaataaaaatcatttcaagttcgtaggagaatttagatgcaagaacgatcgaaaa 2729454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 8402462 - 8402414
Alignment:
Q  66 aaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||| ||| ||||||||| ||||||||||| ||||||||||||||||    
T  8402462 aaaggtatttgaagaaaatataaagtgaagaacattcatttcaagttcc 8402414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 26418913 - 26418961
Alignment:
Q  56 atggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcat 104  Q
    |||||||||| ||||||||||||||||||||||| ||  ||||||||||    
T  26418913 atggttcttagaaggtttttaaagaaaatacaaattggggaaaattcat 26418961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 27417186 - 27417067
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacggcaga 153  Q
    |||||||||| | ||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||| |||||||| |      
T  27417186 caatggttctaagaaggtttttgaaaacaatacaaagtgaagaaaattcatttcaagttccaaggagtttccagacggaagaacgattgaaaacgggacg 27417087  T
Q  154 aaaattcaaggattcgcaca 173  Q
    |||| ||||| |||||||||    
T  27417086 aaaactcaagaattcgcaca 27417067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 16593675 - 16593582
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaa 146  Q
    |||| |||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||    
T  16593675 tcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttcgagatgaaataatgatcgaaaa 16593582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 25474227 - 25474320
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaa 146  Q
    |||| |||||||| |||||| || |||| |||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||    
T  25474227 tcaagggttcttagaaggttgttgaagacaatataaagtgaagaaaattcatttcaggttcctagtagtttccagatgaaagaacgattgaaaa 25474320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 19949422 - 19949328
Alignment:
Q  80 aaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacggcagaaaaattcaaggattcgcacat 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| || | |||||| |  |||| ||||| | ||||||||    
T  19949422 aaaaaacaaagtgaagaaaattcatttcaagttcctaggagttttcagatgaaagaacaattggaaacgggaagaaaactcaagaaatcgcacat 19949328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 30998961 - 30999049
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatc 141  Q
    |||| |||||||| |||||| || |||| ||||||||||| |||||||||||||||||||| || |||||| |||| | ||||||||||    
T  30998961 tcaagggttcttagaaggttgttgaagacaatacaaagtggagaaaattcatttcaagttcatatgagttttcaaacggaagaacgatc 30999049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 18818894 - 18818953
Alignment:
Q  55 aatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||| ||||| ||| |||| |||||||||||||||||||||| ||||||||||    
T  18818894 aatggttcttagaaggtctttgaagacaatacaaagtgaagaaaattcaattcaagttcc 18818953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 35708000 - 35708087
Alignment:
Q  60 ttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||||| |||||| || |||| |||||||| |||| |||||| |||||||||||  |||||||| || | ||||||||||||||||||    
T  35708000 ttcttagaaggttgttgaagacaatacaaaatgaacaaaatttatttcaagttctcaggagttttcagacgaaagaacgatcgaaaac 35708087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 15829339 - 15829392
Alignment:
Q  71 tttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttc 124  Q
    ||||| ||||||||||||||| ||||||||||||||||| || |||||||||||    
T  15829339 ttttttaagaaaatacaaagtaaagaaaattcatttcaaatttctaggagtttc 15829392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 17415101 - 17415028
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttc 113  Q
    |||||||||||| |||||||||||||  || | ||| |||| || | |||||||||||||||||||||||||||    
T  17415101 atgaagattgaaatcaatggttcttaggagttatttgaagacaacaaaaagtgaagaaaattcatttcaagttc 17415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 18236226 - 18236167
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttc 113  Q
    |||||||||||| |||||| || |||| |||||||  |||||||||||||||||||||||    
T  18236226 caatggttcttagaaggttgttgaagacaatacaagatgaagaaaattcatttcaagttc 18236167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 22525744 - 22525685
Alignment:
Q  53 tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagtt 112  Q
    ||||||||||||| ||||| ||| |||| || ||||||||||||||||| ||||||||||    
T  22525744 tcaatggttcttagaaggtatttgaagacaacacaaagtgaagaaaatttatttcaagtt 22525685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 21505062 - 21505000
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttccta 116  Q
    |||||||||| | ||||||||| |||| |||||||  ||||||||||||||||||| ||||||    
T  21505062 caatggttctgagaaggtttttgaagacaatacaagttgaagaaaattcatttcaaattccta 21505000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 1733287 - 1733375
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    ||||||| || ||| || |||| ||||||||||||| ||||||||||| |  ||||||||||||| || | | |||||| |||||||||    
T  1733287 gttcttagaatgttgttgaagataatacaaagtgaataaaattcattttagattcctaggagttttcagacggaagaacaatcgaaaac 1733375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 14921977 - 14921910
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcattt 106  Q
    |||||||||||| |||||||||||||| ||||| | |  ||| |||||||||||||||||| ||||||    
T  14921977 atgaagattgaagttcaatggttcttagaaggtatatgtagacaatacaaagtgaagaaaaatcattt 14921910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 24188146 - 24188217
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagt 111  Q
    ||||||||||||  |||| | ||||| || |||||| |||| |||||||||||||||| ||||||| |||||    
T  24188146 atgaagattgaagacaatagatcttagaaagtttttgaagacaatacaaagtgaagaagattcattccaagt 24188217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 34063741 - 34063704
Alignment:
Q  77 aagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  34063741 aagacaatacaaagtgaagaaaattcatttgaagttcc 34063704  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 19541228 - 19541291
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctagg 118  Q
    |||||||||||| ||||| || ||||| |||||||||| |||||  |||||||||||||| ||||    
T  19541228 caatggttcttataaggtatt-aaagacaatacaaagttaagaatcttcatttcaagttcatagg 19541291  T

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Target: scaffold0362 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 7810 - 7903
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaac 147  Q
    |||||||||||| |||||| || |||| | |||||||| ||||||||||||||||||||||||||||||| || | | ||||| ||||||||||    
T  7810 caatggttcttagaaggttgttgaagacagtacaaagtcaagaaaattcatttcaagttcctaggagttttcagacggaagaatgatcgaaaac 7903  T

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Target: scaffold0171 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 21574 - 21659
Alignment:
Q  40 atgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttc 124  Q
    ||||||||||||  ||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||  ||||||||||    
T  21574 atgaagattgaagatcaatggttcttagaaggtttttaaagacaatacaaagttaagaatattcatttcaagtttataggagtttc 21659  T

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Target: scaffold0171; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 6386 - 6456
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttc 124  Q
    ||||||||| || ||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6386 caatggttcctagaagatttttgaagaaaatacaaagtgaagaaaaatcaattcaagttcctaggagtttc 6456  T

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Target: scaffold0386 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 8624 - 8537
Alignment:
Q  62 cttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaaacgg 149  Q
    |||||||||||||| |||| |||||||  ||||| ||||||||||| ||||||||||| ||| |||| | ||||||||||||||||||    
T  8624 cttaaaaggtttttgaagacaatacaagatgaaggaaattcatttcgagttcctaggaattttcaaacggaagaacgatcgaaaacgg 8537  T

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Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 11717 - 11631
Alignment:
Q  59 gttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccaaatgaaagaacgatcgaaa 145  Q
    ||||||| ||||||||| |||  ||| |||  ||| |||| |||||||| ||||||||||| |||||| | | ||||||||||||||    
T  11717 gttcttagaaggtttttgaagtcaatgcaagatgacgaaagttcatttcgagttcctaggaatttccagacggaagaacgatcgaaa 11631  T

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Target: scaffold0011 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 228124 - 228050
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||| ||||||  |||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  228124 atgaatattgaagacaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttcc 228050  T

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Target: scaffold0188 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 26893 - 26809
Alignment:
Q  40 atgaagattgaa-ttcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagttt 123  Q
    ||||| |||||| |||||||||||||| || ||| || |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  26893 atgaaaattgaagttcaatggttcttagaaagttcttgaagacaatacaaagtgaagaaaattcgtttcaagttcataggagttt 26809  T

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Target: scaffold0190 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 11635 - 11564
Alignment:
Q  41 tgaagattgaat-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagt 111  Q
    |||||||||||| |||||| |||||| ||||| ||| |||| ||||||||||||||||||||||||||||||    
T  11635 tgaagattgaatatcaatgattcttataaggtatttgaagacaatacaaagtgaagaaaattcatttcaagt 11564  T

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Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 1985 - 2059
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    ||||||||||||  |||||||| ||| ||| ||| | ||||||||||||||||||||||||| ||||||||||||    
T  1985 atgaagattgaagacaatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttcc 2059  T

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Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 1978 - 2038
Alignment:
Q  54 caatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||||||| | ||||||| |||| |||||||||| ||||||||||||||||||||||    
T  1978 caatggttcttatatggtttttgaagacaatacaaagtaaagaaaattcatttcaagttcc 2038  T

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Target: scaffold0065 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 12421 - 12495
Alignment:
Q  40 atgaagattgaattcaatggttcttaaaaggtttttaaagaaaatacaaagtgaagaaaattcatttcaagttcc 114  Q
    |||||||| |||  |||||||| ||| ||| ||| | ||||||||||||||||||||||||| ||||||||||||    
T  12421 atgaagatcgaagacaatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttcc 12495  T

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