View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1322_high_33 (Length: 228)
Name: NF1322_high_33
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_high_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5560889 - 5561110
Alignment:
| Q |
1 |
ccatgtactataaaaacggtttctttcttatgttgttggttactgcagaatctcgtactcttaaactgcaactgaacctaggtcgtgcaacaaatccatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
5560889 |
ccatgtactataaaaacggtttctttcttatgttgttggttgctgcagaatctcgtactcttaaactgcaactgaacctagttcgtgcaacaaatccgtt |
5560988 |
T |
|
| Q |
101 |
ttccattttcaaatctttctgtacttcttctaactgcacagaagaagaaaagaagaaaattgaacaaacccaggatttgtttttgcaagatataagcaaa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5560989 |
tcccattttcaaatctttctgtacttcttctaactgcacagaagaagaaaagaagaaaattgaacaaacccaggatttgtttttgcaagatataagcaaa |
5561088 |
T |
|
| Q |
201 |
acaatggctacaaatttggatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5561089 |
acaatggctacaaatttggatg |
5561110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University