View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_high_5 (Length: 476)
Name: NF1322_high_5
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 41784922 - 41785368
Alignment:
| Q |
1 |
ctcgaattggaaactcaaatcaatcagagaaatgagttggaagagcagttaagagatacaaattatgagattaaacaactgatgaatgaaaataaggccc |
100 |
Q |
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| T |
41784922 |
ctcgaattggaaactcaaatcaatcagagaaatgagttggaagagcagttaagagatacaaattatgagattaaacaactgatgaatgaaaataaggccc |
41785021 |
T |
|
| Q |
101 |
tgcaggatagaaaccatgaactgaaagcagcaatgatacaaagaggtgaagagatatcaaattttttaaaggaaaacgatagcgatgaaaatggagcttc |
200 |
Q |
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| T |
41785022 |
tgcaggatagaaaccatgaactgaaagcagcaatgatacaaagaggtgaagagatatcaaattttttaaaggaaaacgatagcgatgaaaatggagcttc |
41785121 |
T |
|
| Q |
201 |
aatggagatcatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttggaactccagaatgagcga |
300 |
Q |
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| T |
41785122 |
aattgagattatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttggaactccagaatgagcga |
41785221 |
T |
|
| Q |
301 |
aaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaaaactataaaggatcaga |
400 |
Q |
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| T |
41785222 |
aaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaaaactataaaggatcaga |
41785321 |
T |
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| Q |
401 |
catcaacaattgaccgaataaatgcggagcaaaaacaaaccataatc |
447 |
Q |
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| T |
41785322 |
catcaaccattgaccgaataaatgcggagcaaaaacaaaccataatc |
41785368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 174 - 447
Target Start/End: Original strand, 10834316 - 10834587
Alignment:
| Q |
174 |
aaacgatagcgatgaaaatggagcttcaatggagatcatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaa |
273 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| || || || ||||| |||| |||| |
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| T |
10834316 |
aaacgatagcgacgaaaatggagcttcgatggagatcatggctttaaaagctgaagttaatgacatgggactagatttcgataacttgcatgaac-taaa |
10834414 |
T |
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| Q |
274 |
accaagttggaactccagaatgagcgaaaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctg |
373 |
Q |
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| T |
10834415 |
atcaagttcgagctctcaaatgagcgaaaccagaagcagtatgctgaaagcctggcaaaggtggaaaatttaaccacaaagtttgcaacccagatagctg |
10834514 |
T |
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| Q |
374 |
atcaagagaaaactataaaggatcagacatcaacaattgaccgaataaatgcggagcaaaaacaaaccataatc |
447 |
Q |
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| T |
10834515 |
atc-agagataactataatggatcaagcaccaaccattgaccaaataaatgtggaccaaaaacaaaccataatc |
10834587 |
T |
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