View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_high_8 (Length: 412)
Name: NF1322_high_8
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 38 - 406
Target Start/End: Original strand, 54208126 - 54208494
Alignment:
| Q |
38 |
ctatgcattgcatattatgccttctttgctccttttcttggaaatgacatctttgaatacgtcgcttttggtgtttactctctactggtaagtaactatc |
137 |
Q |
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| T |
54208126 |
ctatgcattgcatattatgccttctttgctccttttcttggaaaggacatctttgaattcgtcgcttttggtgtttactctctactggtaagtaactatc |
54208225 |
T |
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| Q |
138 |
cgattcgtctctacgttccttttgtgtttcattaaacaagagtgcggtactctttcatttacttgttcctcaattttgaactgcaggcactttctgtatt |
237 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54208226 |
cgattcatctctacgttccttctgtgtttcattaaacaagagtgcggtactctttcatttacttgttcctcaattttgaactgcaggcactttctgtatt |
54208325 |
T |
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| Q |
238 |
ctttctatatgttcgatgcactgccattgaccccgctgatctaggagtaatgattgattgcgataaaacatccaagaatagatcaaaacttgatgaagag |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54208326 |
ctttctatatgttcgatgcactgccattgaccccgctgatctaggagtaatgattgattgcgataaaacatccaagaatagatcaaaacttgatgaagag |
54208425 |
T |
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| Q |
338 |
ttggcaggttggaattttatattattgacatactcttcagatcagaatcaccttaatgattcatctcac |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54208426 |
ttggcaggttggaattttatattattgacatactcttcagatcagaatcaccttaatgattcatctcac |
54208494 |
T |
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