View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_1 (Length: 749)
Name: NF1322_low_1
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 35 - 647
Target Start/End: Original strand, 33840310 - 33840916
Alignment:
| Q |
35 |
gatgaatcgtcgtt-ttattaatatatctcattttgattacctaaagaaaacgtattcataannnnnnngtgatattaaaatgaatcatgtctctctttt |
133 |
Q |
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| T |
33840310 |
gatgaatcgtcgttattattaatatatctcattttgtcttcttaaagaaaacatattcataattttttgg-gatattaaaatgaatcacgtctctctttt |
33840408 |
T |
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| Q |
134 |
actactccgtacttctccatcatgcggacgatcataatgtcaactgaaatgggcctctcacacccatagcataaaaaatgtgtgtcactcatccatctta |
233 |
Q |
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| T |
33840409 |
actactccgtacttctccatcatgcggacaatcataatgtcaactgaaatgggcctctcacacgcatagcataaaaaatgtgtgtcactcatccatctta |
33840508 |
T |
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| Q |
234 |
tctttcaaacgtgtcgttcatctaatcgaacatagcactgtatagtacaatcaaattcaactctcaacaaattttctccaccgcgttataaatttgcaca |
333 |
Q |
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| T |
33840509 |
tctttcaaacgtgtcgttcatctaatcgaacacagcactgtatagtacaatcaaattcaactctcaacaaattttctccaccgcgttataaatttgcaaa |
33840608 |
T |
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| Q |
334 |
ctatatgtcatgcaaaagcatccctcataatacatacatggcagtattaattattttaagccacctaatgcaaaacaagacnnnnnnnncatataaataa |
433 |
Q |
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| T |
33840609 |
ctatatgtcatgcaaaagcatccctcataatacat-----gcagtattaattattttaagccacctaatgcaaaacaagac-aaaaaaacatataaataa |
33840702 |
T |
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| Q |
434 |
ggtactagaaaacaaataactagccattgattttgtggagacacatggcttgtttctgctttcttgttgatcagacaataaagatacggcggagcaaacc |
533 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33840703 |
ggtactagaaaacaaatagctagcctttgattttgtggagacacatggcttgtttctgctttcttgttgatcagacaataaagatacggcggagcaaacc |
33840802 |
T |
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| Q |
534 |
ggtggccggaacgtgttcacggtgtcgcagtggtgccagtgtagctgatatgattacacaaacaagattttgttatgttcctttctattgtaaatcttgg |
633 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33840803 |
ggtggcgggaacgtgttcacggtgtcgcagtggtgccagtgtagctgatatgattacacaaacaagattttgttatgttcctttctattgtaaatcttgg |
33840902 |
T |
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| Q |
634 |
aaagctattttatg |
647 |
Q |
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| T |
33840903 |
aaagctattttatg |
33840916 |
T |
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