View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_10 (Length: 423)
Name: NF1322_low_10
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_10 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 21005470 - 21005733
Alignment:
| Q |
131 |
cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagatta |
230 |
Q |
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| T |
21005470 |
cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagatta |
21005569 |
T |
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| Q |
231 |
caaaaccttcaaatctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgtt |
330 |
Q |
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| T |
21005570 |
caaaaccttcaaatctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgtt |
21005669 |
T |
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| Q |
331 |
gatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattcc |
394 |
Q |
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| T |
21005670 |
gatcaaatggttgtgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattcc |
21005733 |
T |
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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 66796 - 66861
Alignment:
| Q |
131 |
cacagataacacaacaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatg |
196 |
Q |
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| T |
66796 |
cacagataacacaacaaattataaatcgtatttaatgtgaattcttccgatgaagttatccccatg |
66861 |
T |
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