View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_2 (Length: 621)
Name: NF1322_low_2
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 47012259 - 47011690
Alignment:
| Q |
1 |
atattttagaaaatatcgttttataataatcatattaaattgagagtgtttgaaggtcttaaaattgctaagttttcatgtggtagagctttgcgtgaga |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47012259 |
atattttaaaaaatatcgttttataataatcatattaaattgagagtgtttgaaggtcttaaaattgctaagttttcgtgtggtagagctttgcgtgaga |
47012160 |
T |
|
| Q |
101 |
atcggtaatgaagaatttaaaatatggttcacctagcagtgttgtgggtttcaggttgattgaaaaattcgaaaacaattggagatggattgagaaatca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47012159 |
atcggtaatgaagaatttaaaatatgattcacctagcaatgttgtgggtttcaggttgattgaaaaattcgaaaacagttggagatggattgagaaatca |
47012060 |
T |
|
| Q |
201 |
aaatttgtcactcctactgtgaagctaaccgttgtgcggacacacttactaatataggatgcgattgtgacaatgttctgtggctttttgagctatgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47012059 |
aaatttgtcactcctactgtgaagctaaccgttgtgcagacgcacttactaatataggatgcgattgtgacaatgttctgtggctttttgagctatgtca |
47011960 |
T |
|
| Q |
301 |
tgctcaaatcaatcaattggtcattgccgatgtttatggagttactactcctcggtaaatttctctataactcttttcttgggcgaacgccctctttttt |
400 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47011959 |
tgctcaaatcaatcaattggttattgcc-atgtttatggagttactacttctcggtaaatttctctataactcttttcttgggcgaacgccctctttgtt |
47011861 |
T |
|
| Q |
401 |
tcccaaaaaaaatatagtactgaattttctacattttatnnnnnnnnnnnncgaataatcaatattccctattttt-----agaaatcaatattcaccgt |
495 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| || |
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| T |
47011860 |
tcccaaaaaaaatatagtactgagttttctacattttat---ccaaaaaaacgaataatcaatattccctattcttctaaaagaaatcaatattcactgt |
47011764 |
T |
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| Q |
496 |
taagaataatataaatttataaaaatgaaatgttattttgccgatatttttagtaaatatgatttagttattat |
569 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
47011763 |
taagaataatataaatttataaaaatgaaatgttatttctccgacacttttagtaaatatgatttagttattat |
47011690 |
T |
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