View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_23 (Length: 304)
Name: NF1322_low_23
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 39211524 - 39211365
Alignment:
| Q |
63 |
ataatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
162 |
Q |
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| T |
39211524 |
ataatacaataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
39211425 |
T |
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| Q |
163 |
atatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctg |
222 |
Q |
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| T |
39211424 |
atatagctgatagcataaatttgtttcatttttttctacttaaattggatgtaacagctg |
39211365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 27509416 - 27509575
Alignment:
| Q |
63 |
ataatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
162 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27509416 |
ataatacaataaagcatagtcataagaaagtataatgtactagagtcaatttcactatgtctaattgaatcttgacaacagatgttgcaggggaaaaact |
27509515 |
T |
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| Q |
163 |
atatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctg |
222 |
Q |
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| T |
27509516 |
atataactgatagtataaatttgtttcatttttttctacttaaattggatgtaacagctg |
27509575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 27271994 - 27271837
Alignment:
| Q |
64 |
taatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaacta |
163 |
Q |
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| T |
27271994 |
taatacaataaagcatagtcataagaaagtataatgtatttaagtctatttcactgtgtctaattgaatcttcacaacagatgttgcagtggaaaaacta |
27271895 |
T |
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| Q |
164 |
tatagctgatatcataaatttgtttcannnnnnnctacttaaattggatgtaacagctg |
222 |
Q |
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||||||||||| |||||| ||||||| |||| |||||||||||||||||||| |
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| T |
27271894 |
tatagctgatagtataaatatgtttca-ttttttctacctaaattggatgtaacagctg |
27271837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 29706863 - 29706987
Alignment:
| Q |
64 |
taatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaacta |
163 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29706863 |
taatacaataaagcatagtcataagaaagtataatgtatttaagtctatttcactgtgtctaattgaatcttcacaacagatgttgcagtggaaaaacta |
29706962 |
T |
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| Q |
164 |
tatagctgatatcataaatttgttt |
188 |
Q |
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||||||||||| |||||| ||||| |
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| T |
29706963 |
tatagctgatagtataaatatgttt |
29706987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 42092950 - 42093077
Alignment:
| Q |
63 |
ataatactataaagcatagtcataagaaagtataatgtacttaagtcaatttcactatgtctaattgaatcttgacaacagatgttgcagtggaaaaact |
162 |
Q |
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||||||| ||||| ||||||||||||| ||||||| || ||||||| |||||||||||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
42092950 |
ataatacagtaaagtatagtcataagaaggtataatatatttaagtctatttcactatgtttaattgaatcttgacaacatgtgctgcagtggaaaaact |
42093049 |
T |
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| Q |
163 |
atatagctgatatcataaatttgtttca |
190 |
Q |
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| T |
42093050 |
ataaagctgatggtataaatttgtttca |
42093077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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