View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1322_low_25 (Length: 291)

Name: NF1322_low_25
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1322_low_25
NF1322_low_25
[»] chr8 (9 HSPs)
chr8 (97-208)||(2059005-2059116)
chr8 (97-208)||(2051944-2052055)
chr8 (100-208)||(2055801-2055909)
chr8 (101-208)||(2029811-2029918)
chr8 (101-208)||(2034729-2034836)
chr8 (101-208)||(2038807-2038914)
chr8 (101-170)||(2048088-2048157)
chr8 (101-208)||(1948115-1948222)
chr8 (101-208)||(10769458-10769565)
[»] chr4 (1 HSPs)
chr4 (101-208)||(48904895-48905002)
[»] chr1 (2 HSPs)
chr1 (98-144)||(16425472-16425518)
chr1 (98-144)||(16441757-16441803)
[»] chr2 (1 HSPs)
chr2 (102-135)||(28782875-28782908)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 2059116 - 2059005
Alignment:
Q  97 agaagtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059116 agaagtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcat 2059017  T
Q  197 gcaacagatatt 208  Q
    ||||||||||||    
T  2059016 gcaacagatatt 2059005  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 2052055 - 2051944
Alignment:
Q  97 agaagtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcat 196  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  2052055 agaagtttctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatagagctttgaagatgctttaagtgctgtggagaaaaagcat 2051956  T
Q  197 gcaacagatatt 208  Q
    ||||| ||||||    
T  2051955 gcaacggatatt 2051944  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 2055909 - 2055801
Alignment:
Q  100 agtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgca 199  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||||||    
T  2055909 agtttctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggatgctttaagtcccgtcgagaaaaagcatgca 2055810  T
Q  200 acagatatt 208  Q
    |||||||||    
T  2055809 acagatatt 2055801  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 2029918 - 2029811
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||   | || ||||||||||||||||||||||    
T  2029918 gtttctctgtatttgggaggattgttttctgataatagttccttcataggtccatagagctttgacgatggcctaaggcctgtggagaaaaagcatgcaa 2029819  T
Q  201 cagatatt 208  Q
    ||||||||    
T  2029818 cagatatt 2029811  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 2034836 - 2034729
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||   | |  |||||| ||||||||||||| |    
T  2034836 gtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctaatacctgtgcagaaaaagcatgcca 2034737  T
Q  201 cagatatt 208  Q
    ||||||||    
T  2034736 cagatatt 2034729  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 2038914 - 2038807
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||      | |||||||||||||||||||| |    
T  2038914 gtttctctgtatttaggaggattgtcttctgataatagatcctttattggtccatagagctttgaggatgaccaatgacctgtggagaaaaagcatgcta 2038815  T
Q  201 cagatatt 208  Q
    ||||||||    
T  2038814 cagatatt 2038807  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 2048157 - 2048088
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatg 170  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  2048157 gtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatg 2048088  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 1948115 - 1948222
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||| ||||||| |||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||   | || ||||| || |||||||||||||    
T  1948115 gtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttgacgatggcctaagacctgttgaaaaaaagcatgcaa 1948214  T
Q  201 cagatatt 208  Q
    ||||||||    
T  1948215 cagatatt 1948222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 10769565 - 10769458
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||   |  | || ||| ||||||| |||||||    
T  10769565 gtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgcaa 10769466  T
Q  201 cagatatt 208  Q
    ||||||||    
T  10769465 cagatatt 10769458  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 48904895 - 48905002
Alignment:
Q  101 gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||  |||| |||  |||  | ||  || ||||||||||||||     
T  48904895 gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcag 48904994  T
Q  201 cagatatt 208  Q
    ||||||||    
T  48904995 cagatatt 48905002  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 16425472 - 16425518
Alignment:
Q  98 gaagtttctctgtatttgggaggattgtcttctgataatagttcctt 144  Q
    ||||||||||| ||||| | |||||||||||| ||||||||||||||    
T  16425472 gaagtttctctatattttgcaggattgtcttcggataatagttcctt 16425518  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 16441757 - 16441803
Alignment:
Q  98 gaagtttctctgtatttgggaggattgtcttctgataatagttcctt 144  Q
    ||||||||||| ||||| | |||||||||||| ||||||||||||||    
T  16441757 gaagtttctctatattttgcaggattgtcttcagataatagttcctt 16441803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 28782875 - 28782908
Alignment:
Q  102 tttctctgtatttgggaggattgtcttctgataa 135  Q
    ||||| ||||||||||||||||||||||||||||    
T  28782875 tttctttgtatttgggaggattgtcttctgataa 28782908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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