View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_3 (Length: 616)
Name: NF1322_low_3
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_3 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 123 - 607
Target Start/End: Original strand, 28071506 - 28071990
Alignment:
| Q |
123 |
gaacaaaccgctatttcccacaatctgcgattgacaatactgaaattatcttatgatattataactatagagtttagtaaaaagacaatagttattctta |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28071506 |
gaacaaaccgctatttcccacaatctgcgattgacaatactgaaattattttatgatattataactatagagtttagtaaaaagacaatagttattctta |
28071605 |
T |
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| Q |
223 |
aaattcttttacatgaagggtgtagtctaaatccaaccctatgatttgagggatattcttgaaaagaccctcaaaattctaaacataattgcgactctta |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28071606 |
aaattcttttacatgaagggtgtagtctaaatccaaccctatgatttgagggatattcttgaaaagaccctcaaaattctaaacataattgcgactctta |
28071705 |
T |
|
| Q |
323 |
gattttaggtataacttagtcccataaaatcgaattgtaaagagaggattgcgaaagctttatttaagttgcatcactagccaatacgggacttggactt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28071706 |
gattttaggtataacttagtcccataaaatcgaattgtaaagagaggattgcgaaagctttatttaagttgcatcactagccaatactggacttggactt |
28071805 |
T |
|
| Q |
423 |
tttccaatacacctattcgtgtccaaggctattgggcatttattgtagaaattgacaccatattagattttaggcctaactcatccctacaaaattcgac |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
28071806 |
tttccaatacacctattcgtgtccaaggctattgggcatttattgtagaaattgacaccacattaggttttaggcctaactcatccctacaaaattcgac |
28071905 |
T |
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| Q |
523 |
ttatgaagtgacaattgtttaagctttataaactcttttaaagccttatctctaatcaatgttaccttcaatttttcagaataat |
607 |
Q |
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| T |
28071906 |
ttatgaagtgacaattgtttaagctttataaactcttttaaagccttatctctaatcaatgttaccttcaatttttcagaataat |
28071990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 29378613 - 29378654
Alignment:
| Q |
123 |
gaacaaaccgctatttcccacaatctgcgattgacaatactg |
164 |
Q |
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| T |
29378613 |
gaacaaaccgctatttcccacgatccgcgattgacaacactg |
29378654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 35849508 - 35849472
Alignment:
| Q |
123 |
gaacaaaccgctatttcccacaatctgcgattgacaa |
159 |
Q |
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| T |
35849508 |
gaacaaaccgctattttccacaatctgcaattgacaa |
35849472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 36069 - 36033
Alignment:
| Q |
123 |
gaacaaaccgctatttcccacaatctgcgattgacaa |
159 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |
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| T |
36069 |
gaacaaaccgctattttccacaatctgcaattgacaa |
36033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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