View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_30 (Length: 266)
Name: NF1322_low_30
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 27086795 - 27087003
Alignment:
| Q |
33 |
gagagcgcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgaccggtatacatgagcaaatagaaaaaggttattat |
132 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
27086795 |
gagagcgcttctttgaatacatgacaagggtcgaaacccgaatcagaatcatgaattgttgatgaccggtatacatgaacaaatagaaaaaggctattat |
27086894 |
T |
|
| Q |
133 |
tgatgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttctagatttagggg |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |
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| T |
27086895 |
tgatgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatgattttacaagcacaacatctttcatttctagctttagggg |
27086994 |
T |
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| Q |
233 |
tgctctctg |
241 |
Q |
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|||| |||| |
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| T |
27086995 |
tgctttctg |
27087003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 27046670 - 27046870
Alignment:
| Q |
33 |
gagagcgcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgaccggtatacatgagcaaatagaaaaaggttattat |
132 |
Q |
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||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| || | || ||||||||| || |
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| T |
27046670 |
gagagtgcttctttgaatacatgacaagggtcgaaacccgaatcagaatcatgaattgttgatggccggtatacatgaacagcttgacaaaggttataat |
27046769 |
T |
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| Q |
133 |
tgatgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttctagatttagggg |
232 |
Q |
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| T |
27046770 |
tgttgtctttattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaacatctttcatttctaggtttagggg |
27046869 |
T |
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| Q |
233 |
t |
233 |
Q |
| |
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| |
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| T |
27046870 |
t |
27046870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 27042647 - 27042844
Alignment:
| Q |
33 |
gagagcgcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgaccggtatacatgagcaaatagaaaaaggttattat |
132 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| || |||| ||||||| |
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| T |
27042647 |
gagagcgcttctttgaatacatgactagggtggaaacctgaatcagaatcatgtattgttgatgaccggtatacatgaacaaaatgacaaagattattat |
27042746 |
T |
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| Q |
133 |
tgatgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttctagatttagg |
230 |
Q |
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| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
27042747 |
ttatgtatatattgtcaagtgtagacaaagagagaatacaagaaggaatggacttggatggttttacaagtacaatatctttcatttctagctttagg |
27042844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 27106794 - 27106975
Alignment:
| Q |
39 |
gcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgaccggtatacatgagcaaatagaaaaaggttattattgatgt |
138 |
Q |
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||||||||||||||||||||| || ||||| || ||||||||||| ||||| || ||| |||||||||||| || | || ||||||||||| ||| | |
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| T |
27106794 |
gcttctttgaatacatgacaaaagttgaaactcgaatcagaatcattaattgatggtgatcggtatacatgaacagtttgagcaaggttattatagattt |
27106893 |
T |
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| Q |
139 |
atatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttc |
220 |
Q |
| |
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| ||||||||| |||||| || |||||||||||||||||||| || || |||||||||| || |||| ||||||||||| |
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| T |
27106894 |
ctctattgtcaattgtagaaagtgaaagaatacaagaaggaattgattttgatggttttatgagtacaacgtctttcatttc |
27106975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 27100281 - 27100468
Alignment:
| Q |
33 |
gagagcgcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgaccggtatacatgagcaaatagaaaaaggttattat |
132 |
Q |
| |
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||||| |||||||| |||||||||||| || ||||| | ||||||||||| ||||| || ||| || |||| |||| || | || ||||||||||| |
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| T |
27100281 |
gagagtgcttctttaaatacatgacaaaagttgaaactcaaatcagaatcattaattgatggtgatcgatatatatgaacagtttgagcaaggttattat |
27100380 |
T |
|
| Q |
133 |
tgatgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttc |
220 |
Q |
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||| | | ||||||||| ||| || ||||||||||||||||||||||| || || |||||||||| |||||||| |||||||||||| |
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| T |
27100381 |
agatttctctattgtcaattgtggaaagagaaagaatacaagaaggaattgattttgatggttttataagcacaacatctttcatttc |
27100468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 27064563 - 27064757
Alignment:
| Q |
38 |
cgcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgaccggtatacatgagcaaatagaaaaaggttattattgatg |
137 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | |||| |||||||||||| |||||| |||||||||||| || | | || |||||||||| |
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| T |
27064563 |
cgcttctttgaatacatgacaagggttgaaactggaatcataatcatgaattgatgatgatcggtatacatgaacagtttgggcaatgttattattggca |
27064662 |
T |
|
| Q |
138 |
tatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttctagatttagggg |
232 |
Q |
| |
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| ||||||||||||| || ||||||||||||||||||| | |||| || ||||| |||||||||| || ||||| | |||| | ||||||||| |
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| T |
27064663 |
cctttattgtcaagtgttgatagagaaagaatacaagaagaagtggattttgatggctttacaagcaaaacatcttccttttcaatatttagggg |
27064757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 27044590 - 27044768
Alignment:
| Q |
38 |
cgcttctttgaatacatgacaagggtggaaacccggatcagaatcatgaattgttgatgac---cggtatacatgagcaaatagaaaaaggttattattg |
134 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | |||| | |||||||||| |||||| |||||||||||| ||| | | || |||||||||| |
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| T |
27044590 |
cgcttctttgaatacatgacaagggttgaaactggaatcatagtcatgaattgctgatgatgatcggtatacatgaacaatttgggcaatgttattattg |
27044689 |
T |
|
| Q |
135 |
atgtatatattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctt |
213 |
Q |
| |
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| |||||| |||||||| ||||||||||||||||||||| ||||||| || ||||||||||||| || ||||| |
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| T |
27044690 |
gcacctttattgttcagtgtagatagagaaagaatacaagaaggagtggactttgaaggttttacaagcaaaacatctt |
27044768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 27071636 - 27071730
Alignment:
| Q |
142 |
tattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctttcatttctagatttaggggtgct |
236 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||| || |||||||||||||||| || ||||| | |||| | |||||||||||| |
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| T |
27071636 |
tattgtcaagtgttgacagagaaagaatacaagatggagtggattttgatggttttacaagcaaaacatcttccttttcaatctttaggggtgct |
27071730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 27092432 - 27092503
Alignment:
| Q |
142 |
tattgtcaagtgtagacagagaaagaatacaagaaggaatggacttggatggttttacaagcacaaaatctt |
213 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||| |||| || ||||| |||||||||| || ||||| |
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| T |
27092432 |
tattgtcaagtgttgatagagaaagaatacaagaaggagtggattttgatggctttacaagcaaaacatctt |
27092503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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