View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_33 (Length: 262)
Name: NF1322_low_33
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39574409 - 39574641
Alignment:
| Q |
1 |
tattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcactaaatattcttagtgagtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39574409 |
tattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcactaaatattcttagtgagtttt |
39574508 |
T |
|
| Q |
101 |
gattgatttgtgccttgatggaaggatcaacgatctcttcaattatccctttgtctttgcaatgcaatccccactcagccaaattgacttgctcacttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39574509 |
gattgatttgtgccttgatggaaggatcaacgatctcttcaagtatccctttgtctttgcaatgcaatccccactcagccaaattgacttgctcacttgg |
39574608 |
T |
|
| Q |
201 |
acaagacagttcgatggctggtcttgcgcacaa |
233 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
39574609 |
acaagacagttctatggctggtcttgcgcacaa |
39574641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39542574 - 39542806
Alignment:
| Q |
1 |
tattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcactaaatattcttagtgagtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39542574 |
tattccaagtcccacaacacatcaaccattgttggcctgtcacaaccataatcatgtaagcatttttccacagtctcgttaaatattcttagtgagtttt |
39542673 |
T |
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| Q |
101 |
gattgatttgtgccttgatggaaggatcaacgatctcttcaattatccctttgtctttgcaatgcaatccccactcagccaaattgacttgctcacttgg |
200 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||| |
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| T |
39542674 |
gattaatttgcgccttgatggaaggatcaacgatctcttcaagtatccctttgtttttgcaaaacaatccccactcagccaaatttatttgctcacttgg |
39542773 |
T |
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| Q |
201 |
acaagacagttcgatggctggtcttgcgcacaa |
233 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
39542774 |
acaagacaattcgatggctggtcttgcgcacaa |
39542806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39578942 - 39579174
Alignment:
| Q |
1 |
tattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcactaaatattcttagtgagtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| || ||||||||||||||||| |||||||||| |
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| T |
39578942 |
tattccaagtcccacaacacatcaaccattgttggcctatcacaaccacgatcttgtaagcattttttcatggtctcactaaatattctaagtgagtttt |
39579041 |
T |
|
| Q |
101 |
gattgatttgtgccttgatggaaggatcaacgatctcttcaattatccctttgtctttgcaatgcaatccccactcagccaaattgacttgctcacttgg |
200 |
Q |
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||||||||||||||||||| || |||||||| ||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39579042 |
gattgatttgtgccttgatagagggatcaacaatctctttaagtgtccctttgtctttgcaaagcaatccccactcagccaaattgacttgctcacttgg |
39579141 |
T |
|
| Q |
201 |
acaagacagttcgatggctggtcttgcgcacaa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39579142 |
acaagacagttcgatggctggtcttgcgcacaa |
39579174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39509509 - 39509735
Alignment:
| Q |
1 |
tattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcactaaatattcttagtgagtttt |
100 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||||| |||| ||| ||||||||||||||||| |||||||||| |||| ||||||||| |
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| T |
39509509 |
tattccaagtcccacattacatttcccattgaaggcctatcacaaccatcatcttgtaagcatttttccactttctcactaaactttctaagtgagtttg |
39509608 |
T |
|
| Q |
101 |
gattgatttgtgccttgatggaaggatcaacgatctcttcaattatccctttgtctttgcaatgcaatccccactcagccaaattgacttgctcacttgg |
200 |
Q |
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||| |||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||| ||| || || ||||| || ||||| |
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| T |
39509609 |
gatcaatttgtcccttgatggaaggatcaatgatatcttcaagtatccctttgtctttgcaaaaaattccccactgagctaagttcacttgttcccttgg |
39509708 |
T |
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| Q |
201 |
acaagacagttcgatggctggtcttgc |
227 |
Q |
| |
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| ||| |||| ||||||| |||||| |
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| T |
39509709 |
aagtgacggttcaatggctgttcttgc |
39509735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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