View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1322_low_35 (Length: 256)

Name: NF1322_low_35
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1322_low_35
NF1322_low_35
[»] chr6 (1 HSPs)
chr6 (1-229)||(34667454-34667682)
[»] chr2 (1 HSPs)
chr2 (1-229)||(26961254-26961482)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34667682 - 34667454
Alignment:
Q  1 ctatcattctgtatgttattcgtcagttacatacggaaaccctttctcatgcatcaatgccgacttannnnnnncagcctttatatggggtgagaaaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||    
T  34667682 ctatcattctgtatgttattcgtcagttacatacggaaaccctttctcatgcatcaatgccgacttatttttttcagcctttatatggagtgagaaaggg 34667583  T
Q  101 tgcagatcaactacattgattttcaaaaagttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34667582 tgcagatcaactacattgattttcaaaaagttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatg 34667483  T
Q  201 agagaatttattcaaagaggatatatgtg 229  Q
    |||||||||||||||||||||||||||||    
T  34667482 agagaatttattcaaagaggatatatgtg 34667454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26961482 - 26961254
Alignment:
Q  1 ctatcattctgtatgttattcgtcagttacatacggaaaccctttctcatgcatcaatgccgacttannnnnnncagcctttatatggggtgagaaaggg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  26961482 ctatcattctgtatgttattcttcagttacatacggaaaccctttctcatgcatcaatgccgacttatttttttcagcctttatatggggtgagaaaggg 26961383  T
Q  101 tgcagatcaactacattgattttcaaaaagttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26961382 tgcagatcaactacattgattttcaaaaagttattagatatataaagatacaaatattgtttttaaaattctctaattattttgttatcatttttcaatg 26961283  T
Q  201 agagaatttattcaaagaggatatatgtg 229  Q
    |||||||||||||||||||||||||||||    
T  26961282 agagaatttattcaaagaggatatatgtg 26961254  T

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