View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_36 (Length: 252)
Name: NF1322_low_36
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39574261 - 39574017
Alignment:
| Q |
1 |
aagtgcaacattgatgatgctagatagactttcatgcgaagcaaatcaaggcacaacaatcaacacgcaaatgtctccaatggaggagctgtttctttag |
100 |
Q |
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| T |
39574261 |
aagtgcaacattgatgatgctagatagactttcatgcgaagcaaatcaaggcacaacaatcaacacgcaaatgtctccaatggaggagctgtttctttag |
39574162 |
T |
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| Q |
101 |
atatctcgcctctctgttttgtccttgtttccttgtgtttccccccttagttatggttgtttaatctattctcaattgtatgattgaatggaataaaaca |
200 |
Q |
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| T |
39574161 |
atatctcgcctctctgttttgtccttgtttccttgtgtttccccccttagttatggttgtttaatctattctcaattgtatgattaaatggaataaaaca |
39574062 |
T |
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| Q |
201 |
ataatcatataataaagcaaattgtaattgctggatcctatgata |
245 |
Q |
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| T |
39574061 |
ataatcatataataaagcaacttgtaattgctggatcctatgata |
39574017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 39542415 - 39542230
Alignment:
| Q |
12 |
tgatgatgctagatagactttcatgcgaagcaaatcaaggcacaacaatcaacacgcaaatgtctccaatggaggagctgtttctttagatatctcgcct |
111 |
Q |
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| T |
39542415 |
tgatgatgctagacagaatttcatgcgatgcaaatcaaggtacaacaatcaacacgcaagtgtctccat-----gagctgttttttca-atacctcattt |
39542322 |
T |
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| Q |
112 |
ctctgttttgtccttgtttccttgtgtttccccccttagttatggttgtttaatctattctcaattgtatgattgaatggaataaaacaataat |
205 |
Q |
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| T |
39542321 |
ctctgttttgtccttgtttccttgtattccccccattagttatggtt-cttggtctattctcaattgtaagatt-aatggaataaaacaataat |
39542230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 39578779 - 39578716
Alignment:
| Q |
16 |
gatgctagatagactttcatgcgaagcaaatcaaggcacaacaatcaacacgcaaatgtctcca |
79 |
Q |
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||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
39578779 |
gatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctcca |
39578716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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