View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1322_low_40 (Length: 251)

Name: NF1322_low_40
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1322_low_40
NF1322_low_40
[»] chr1 (8 HSPs)
chr1 (1-243)||(15002298-15002540)
chr1 (1-243)||(15037211-15037452)
chr1 (1-243)||(15011191-15011433)
chr1 (1-243)||(15017306-15017548)
chr1 (1-243)||(15032649-15032885)
chr1 (1-243)||(14522303-14522545)
chr1 (1-243)||(14532424-14532666)
chr1 (151-243)||(15040935-15041029)
[»] scaffold0400 (2 HSPs)
scaffold0400 (1-243)||(6682-6921)
scaffold0400 (1-243)||(12970-13221)
[»] scaffold0365 (2 HSPs)
scaffold0365 (1-243)||(7326-7565)
scaffold0365 (1-243)||(13613-13864)
[»] chr8 (2 HSPs)
chr8 (1-95)||(17027228-17027322)
chr8 (1-95)||(17557720-17557814)
[»] chr7 (1 HSPs)
chr7 (194-240)||(16025269-16025315)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15002540 - 15002298
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15002540 atcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttgaagttcgacaaaaaaggtatgagatccca 15002441  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15002440 taaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggtgccacccgatgttg 15002341  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15002340 agcaaggctctaggccagaaacattaccacacaagcctttgtt 15002298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15037452 - 15037211
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | ||||||||||||||    
T  15037452 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgcttgaagttcgacaaaga-ggtatgagatccca 15037354  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15037353 taaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggtgccacccgatgttg 15037254  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  15037253 agcaaggctctaggccagagacattaccacataagcctttgtt 15037211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15011433 - 15011191
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  15011433 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgcttgaagttcgacacaaaaggtatgagatccca 15011334  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    |||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||  ||||||  ||||||| |||||||    
T  15011333 taaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgataatgaaatttgccaccagatgttg 15011234  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  15011233 agcaaggctctaggccagagacattaccacataagcctttgtt 15011191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15017548 - 15017306
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  15017548 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttgaagttcgacaaaaaaagtatgagatccca 15017449  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    |||||||| |||| ||||| |||||| || |||||||| ||||||||||||||| |||||||||| |  |||||| |||||||  ||||||| ||| |||    
T  15017448 taaacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgtttgtcttatgattatgaaacttgccaccagatattg 15017349  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  15017348 agcaaggctctaggccagagatattaccacacaagcccttgtt 15017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15032885 - 15032649
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||||       
T  15032885 atcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgcttgaaattcgacacaaaaggtatgagatc--- 15032789  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
       ||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||||  ||||||| |||||||    
T  15032788 ---acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgattatgaaatttgccaccagatgttg 15032692  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  15032691 agcaaggctctaggccagagacattaccacataagcctttgtt 15032649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14522303 - 14522545
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    ||||||||||||||||  ||||||||||||| |||||||||||| | || |||||| ||||||||||||||||||   ||||||  ||||||||||||||    
T  14522303 atcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcaacaaaattggtatgagatccca 14522402  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    |||||||  |||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||| ||| | ||||| |||||||    
T  14522403 taaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttccacctgatgttg 14522502  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  14522503 agcaaggctctaggccagagacattaccgcacaagcctttgtt 14522545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14532424 - 14532666
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||  | |||| ||||||||||||||||||| ||||||||||||||||||||||     
T  14532424 atcaaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgtgcttgaagtttgacaaaaaaggtatgagatcccg 14532523  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    ||| |||  ||||  ||||||||||  || |||||||||| || ||||||||||||||| ||| |||  ||||||||||||||| ||||||| |||||||    
T  14532524 taagcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgctagtcttatgactatgaaagttgccacctgatgttg 14532623  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    |||||  | |||||||||| |||||||||||||||||||||||    
T  14532624 agcaacacactaggccagagacattaccacacaagcctttgtt 14532666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 15041029 - 15040935
Alignment:
Q  151 caccaaaattttgttaggattatga--ctatgaaaggtgccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    |||||||||| |||||| |||||||  ||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  15041029 caccaaaattgtgttagtattatgagactatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttgtt 15040935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6921 - 6682
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||| |||| |||||| ||||||  |||    
T  6921 atcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacataaaaggcatgagaggcca 6822  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    |||| ||  |||| | ||||||||| ||| ||||||| || || ||| | ||||||||| |  ||||  ||||||||||||||| | |||||  ||||||    
T  6821 taaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaaagttaccacctaatgttg 6722  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    |||||||||||| ||||||    ||||||||||||||||||||    
T  6721 agcaaggctctaagccaga---gttaccacacaagcctttgtt 6682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13221 - 12970
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    ||||||||||||| || |||| ||||||||| |||||||||||| || |||||||||||||||| | ||||||||  |  | ||||||||||||| ||||    
T  13221 atcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtagaaaaggtatgagaaccca 13122  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatg---------aaaggtgccac 191  Q
    |||||||  |||| |||||||||||  || |||||||||| || ||||||  |||||||||||||||  |||||||||||         |||| | ||||    
T  13121 taaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaaagttatgaaagtttccac 13022  T
Q  192 ccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    | |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13021 ctgatgttgagcaaggctctagaccagagacattaccacacaagcctttgtt 12970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7565 - 7326
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||| |||| |||||| ||||||  |||    
T  7565 atcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacataaaaggcatgagaggcca 7466  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgttg 200  Q
    |||| ||  |||| | ||||||||| ||| ||||||| || || ||| | ||||||||| |  ||||  ||||||||||||||| | |||||  ||||||    
T  7465 taaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaaagttaccacctaatgttg 7366  T
Q  201 agcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    |||||||||||| ||||||    ||||||||||||||||||||    
T  7365 agcaaggctctaagccaga---gttaccacacaagcctttgtt 7326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13864 - 13613
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccca 100  Q
    ||||||||||||| || |||| ||||||||| |||||||||||| || |||||||||||||||| | ||||||||  |  | ||||||||||||| ||||    
T  13864 atcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtagaaaaggtatgagaaccca 13765  T
Q  101 taaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatg---------aaaggtgccac 191  Q
    |||||||  |||| |||||||||||  || |||||||||| || ||||||  |||||||||||||||  |||||||||||         |||| | ||||    
T  13764 taaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaaagttatgaaagtttccac 13665  T
Q  192 ccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttgtt 243  Q
    | |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13664 ctgatgttgagcaaggctctagaccagagacattaccacacaagcctttgtt 13613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17027322 - 17027228
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgaga 95  Q
    |||||||||||||| | |||||||||| ||| ||||||||| || ||  |||||||||||||||||  |||||||| || | |||||| ||||||    
T  17027322 atcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagttagatagaaaaggcatgaga 17027228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17557814 - 17557720
Alignment:
Q  1 atcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgaga 95  Q
    |||||||||||||| | |||||||||| ||| ||||||||| || ||  |||||||||||||||||  |||||||| || | |||||| ||||||    
T  17557814 atcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagttagatagaaaaggcatgaga 17557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 16025315 - 16025269
Alignment:
Q  194 gatgttgagcaaggctctaggccagaaacattaccacacaagccttt 240  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||||    
T  16025315 gatgttgggcagggctctaagccagagacattaccacacaagccttt 16025269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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