View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1322_low_42 (Length: 228)
Name: NF1322_low_42
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 1911056 - 1910944
Alignment:
| Q |
14 |
aaagctataaataaggacacctcaattttgatgtggaaaactcctctcaaatatacagaatcgttagatatttctttcctgtggaattaatctaatcaac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1911056 |
aaagctataaataaggacacctcaattttgatgtggaaaactcctctcaaatatacagaatcgttagatatttctttcctgcggaattaatctaatcaac |
1910957 |
T |
|
| Q |
114 |
aaaatgaacatat |
126 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1910956 |
aaaatgaacatat |
1910944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University