View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1322_low_44 (Length: 215)

Name: NF1322_low_44
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1322_low_44
NF1322_low_44
[»] chr4 (13 HSPs)
chr4 (31-189)||(4732926-4733085)
chr4 (59-138)||(33519228-33519307)
chr4 (61-144)||(23353818-23353901)
chr4 (59-137)||(31859739-31859817)
chr4 (59-127)||(17187371-17187439)
chr4 (59-186)||(21077431-21077559)
chr4 (85-153)||(26159979-26160045)
chr4 (59-110)||(5676398-5676449)
chr4 (75-138)||(29437675-29437738)
chr4 (61-131)||(10576653-10576723)
chr4 (75-136)||(7024058-7024119)
chr4 (59-112)||(12111191-12111244)
chr4 (59-127)||(46647393-46647461)
[»] chr2 (14 HSPs)
chr2 (59-169)||(18818900-18819011)
chr2 (59-138)||(31274154-31274233)
chr2 (89-153)||(17414985-17415050)
chr2 (59-134)||(18236144-18236219)
chr2 (63-107)||(21505007-21505051)
chr2 (75-168)||(17862624-17862719)
chr2 (75-181)||(24047597-24047703)
chr2 (59-105)||(31262195-31262241)
chr2 (59-115)||(22525680-22525736)
chr2 (59-110)||(16593616-16593667)
chr2 (63-136)||(27417102-27417175)
chr2 (75-144)||(39730661-39730730)
chr2 (94-142)||(12363402-12363450)
chr2 (82-138)||(24434840-24434896)
[»] chr8 (15 HSPs)
chr8 (59-144)||(27097633-27097718)
chr8 (64-169)||(5153961-5154068)
chr8 (72-136)||(32239499-32239563)
chr8 (59-145)||(6888023-6888109)
chr8 (59-107)||(5570008-5570056)
chr8 (59-110)||(16052142-16052193)
chr8 (59-126)||(28291950-28292017)
chr8 (59-163)||(29291968-29292074)
chr8 (59-112)||(13081798-13081851)
chr8 (59-170)||(14424616-14424729)
chr8 (71-134)||(30543972-30544035)
chr8 (59-136)||(24120422-24120499)
chr8 (94-138)||(12774681-12774725)
chr8 (59-131)||(30850944-30851016)
chr8 (66-134)||(31436675-31436742)
[»] chr6 (10 HSPs)
chr6 (59-169)||(26499652-26499763)
chr6 (59-181)||(9942942-9943066)
chr6 (89-138)||(16387092-16387141)
chr6 (59-110)||(15575122-15575173)
chr6 (59-95)||(24618081-24618117)
chr6 (59-139)||(26512615-26512695)
chr6 (59-139)||(26517731-26517811)
chr6 (59-110)||(17860314-17860365)
chr6 (62-102)||(23418983-23419023)
chr6 (59-127)||(32930294-32930361)
[»] chr1 (14 HSPs)
chr1 (61-140)||(26102257-26102336)
chr1 (75-138)||(23505970-23506033)
chr1 (59-148)||(19257632-19257722)
chr1 (60-153)||(52271067-52271160)
chr1 (59-147)||(25126678-25126766)
chr1 (59-110)||(11769859-11769910)
chr1 (59-110)||(25373944-25373995)
chr1 (59-112)||(25494352-25494405)
chr1 (71-136)||(25665609-25665674)
chr1 (59-144)||(26854151-26854236)
chr1 (59-110)||(30675682-30675733)
chr1 (75-144)||(15850860-15850929)
chr1 (59-144)||(27461012-27461097)
chr1 (75-127)||(21548862-21548914)
[»] scaffold0011 (1 HSPs)
scaffold0011 (59-136)||(228026-228103)
[»] chr7 (10 HSPs)
chr7 (59-167)||(8308843-8308952)
chr7 (75-136)||(1074667-1074728)
chr7 (75-136)||(18496779-18496840)
chr7 (59-110)||(29544718-29544769)
chr7 (58-110)||(7372434-7372485)
chr7 (59-110)||(20017151-20017202)
chr7 (59-153)||(25706352-25706446)
chr7 (58-115)||(4828985-4829042)
chr7 (59-112)||(21545690-21545743)
chr7 (75-127)||(24596852-24596904)
[»] chr5 (12 HSPs)
chr5 (59-188)||(19763671-19763802)
chr5 (61-149)||(17695288-17695377)
chr5 (59-144)||(18178300-18178384)
chr5 (59-117)||(7742728-7742786)
chr5 (59-110)||(11274195-11274246)
chr5 (59-110)||(16622542-16622592)
chr5 (65-144)||(26070678-26070757)
chr5 (60-110)||(26329935-26329985)
chr5 (59-112)||(16634245-16634298)
chr5 (75-119)||(18872908-18872952)
chr5 (59-110)||(30072314-30072365)
chr5 (59-112)||(18452675-18452728)
[»] chr3 (10 HSPs)
chr3 (59-127)||(19542972-19543040)
chr3 (64-131)||(21828977-21829044)
chr3 (60-136)||(18474369-18474445)
chr3 (59-118)||(19219068-19219127)
chr3 (59-110)||(25883301-25883352)
chr3 (75-137)||(33577942-33578004)
chr3 (59-120)||(5632398-5632459)
chr3 (75-112)||(19263767-19263804)
chr3 (75-144)||(21653561-21653630)
chr3 (59-135)||(26418918-26418994)
[»] scaffold0650 (1 HSPs)
scaffold0650 (59-111)||(5634-5686)
[»] scaffold0282 (1 HSPs)
scaffold0282 (62-110)||(22479-22527)
[»] scaffold1149 (1 HSPs)
scaffold1149 (75-136)||(2001-2062)
[»] scaffold0190 (1 HSPs)
scaffold0190 (59-144)||(11530-11614)
[»] scaffold0171 (1 HSPs)
scaffold0171 (59-111)||(21596-21648)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 4732926 - 4733085
Alignment:
Q  31 atgaagatatcaaaataggttttttgaatcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacaga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  4732926 atgaagatatcaaaataggttttttgaatcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaaatttcaaggcatttcaagacaga 4733025  T
Q  131 agaacgctcaaaaagggac-aaaactgtaaaatttgcacacgggctactgcctgatgtgc 189  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  4733026 agaacgctcaaaaaggaacaaaaactgtaaaatttgcacacgggctactgcctgatgtgc 4733085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 33519228 - 33519307
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||    
T  33519228 tcttagaaggtctttgaagacaatacaagttgaagaaaattcatttcaaattccaaggcatttccagacagaagaacgct 33519307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 23353818 - 23353901
Alignment:
Q  61 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||| |||| |||| ||| |||||| ||||||| ||||    
T  23353818 ttagaaggtcttttaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaaaacagaaaaacgctcgaaaa 23353901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 31859817 - 31859739
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgc 137  Q
    ||||||||||| ||| ||||||||||||  ||||||||||| |||||||||| |||| ||||||||||| |||||||||    
T  31859817 tcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttccaaggcatttcaagacggaagaacgc 31859739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 17187371 - 17187439
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 127  Q
    ||||||||| | ||| ||||||||||||  | |||||||||||||||||||||||||||||| ||||||    
T  17187371 tcttagaagttatttgaagacaatacaaagtaaagaaaattcatttcaagtttcaagacattgcaagac 17187439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 21077431 - 21077559
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggac-aaaactgt 157  Q
    |||||||||||  |  |||||||||||| ||||| ||||||||||||||||| |||| ||||  ||||  ||||||  |||||||||| || |||||||     
T  21077431 tcttagaaggtaatcgaagacaatacaaattgaataaaattcatttcaagttccaaggcattgaaagatggaagaatactcaaaaaggtacgaaaactgc 21077530  T
Q  158 aaaatttgcacacgggctactgcctgatg 186  Q
    |||||| ||||| | ||| |||| |||||    
T  21077531 aaaattcgcacaagagctgctgcttgatg 21077559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 26159979 - 26160045
Alignment:
Q  85 aagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaa 153  Q
    |||||||||||||||||||||||||| ||||  |||||||||| |||||||||||  ||||||||||||    
T  26159979 aagttgaagaaaattcatttcaagttccaag-gatttcaagacggaagaacgctc-gaaagggacaaaa 26160045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 5676398 - 5676449
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  5676398 tcttagaaggtttttgaagacaatacaagatgaagaaaattcatttcgagtt 5676449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 29437675 - 29437738
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    ||||||||||||  |||||||| ||||||| ||||| |||| |||  |||||||||||||||||    
T  29437675 aagacaatacaaagtgaagaaacttcatttgaagttccaaggcatcgcaagacagaagaacgct 29437738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 10576653 - 10576723
Alignment:
Q  61 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaa 131  Q
    ||||||||| ||| ||| ||| |||||||   ||||||||||| ||||||| ||| |||||||||||||||    
T  10576653 ttagaaggtttttgaaggcaacacaagttagggaaaattcattccaagttttaagtcatttcaagacagaa 10576723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 7024119 - 7024058
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    |||| |||||||| |||||||||||||| | |||||  |||||||||||| || ||||||||    
T  7024119 aagataatacaagatgaagaaaattcatataaagttctaagacatttcaacacggaagaacg 7024058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 12111244 - 12111191
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    ||||| ||||| ||| |||| |||||||  ||||||||||||||||||||||||    
T  12111244 tcttataaggttttttaagataatacaaagtgaagaaaattcatttcaagtttc 12111191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 46647393 - 46647461
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 127  Q
    ||||| ||||| |||||||| |||||||||||  ||||||||||   || || ||||||||||||||||    
T  46647393 tcttaaaaggtttttaaagataatacaagttggggaaaattcatccaaaattacaagacatttcaagac 46647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 18818900 - 18819011
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaaggga-caaaactgt 157  Q
    ||||||||||||||| ||||||||||||  ||||||||||||| |||||||| ||||||||| |||||| |||||| |||||||||||||  |||||||     
T  18818900 tcttagaaggtctttgaagacaatacaaagtgaagaaaattcaattcaagttccaagacattgcaagacggaagaatgctcaaaaagggatgaaaactgc 18818999  T
Q  158 aaaatttgcaca 169  Q
    |||||| |||||    
T  18819000 aaaattcgcaca 18819011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 31274154 - 31274233
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||  ||||||| | || |||||||||||    
T  31274154 tcttagaaggtctttgaagacaatataagttgaagaaaattcattccaagtttcctgacattttaggatagaagaacgct 31274233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17415050 - 17414985
Alignment:
Q  89 tgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctca-aaaagggacaaaa 153  Q
    ||||||||||||||||||||||  |||||||| |||||| |||||||||||| |||||||||||||    
T  17415050 tgaagaaaattcatttcaagttctaagacattgcaagacggaagaacgctcaaaaaagggacaaaa 17414985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 18236219 - 18236144
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaa 134  Q
    |||||||||||  || ||||||||||||| ||||||||||||||||||||||  ||| ||||| ||||| ||||||    
T  18236219 tcttagaaggttgttgaagacaatacaagatgaagaaaattcatttcaagttcaaaggcatttaaagacggaagaa 18236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 21505051 - 21505007
Alignment:
Q  63 agaaggtctttaaagacaatacaagttgaagaaaattcatttcaa 107  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||    
T  21505051 agaaggtttttgaagacaatacaagttgaagaaaattcatttcaa 21505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 17862624 - 17862719
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac-aaaactgtaaaatttgcac 168  Q
    |||||| |||||||||  ||||||||||  |||||| |||||||||||| | | ||| ||||||| |||||||||| ||||||| |||||||||||    
T  17862624 aagacagtacaagttggggaaaattcatcccaagttccaagacatttcatggcggaaaaacgctcgaaaaagggacaaaaactgcaaaatttgcac 17862719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 24047597 - 24047703
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaactgtaaaatttgcacacgggc 174  Q
    |||||||||||||||   |||||||||   |||||| |||| ||||||||||  ||| ||||||| |||| ||||||||||| |||||| ||||  ||||    
T  24047597 aagacaatacaagttagggaaaattcaacccaagttccaaggcatttcaagatggaaaaacgctcgaaaaaggacaaaactgcaaaattcgcacctgggc 24047696  T
Q  175 tactgcc 181  Q
    || ||||    
T  24047697 tattgcc 24047703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 31262195 - 31262241
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttc 105  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  31262195 tcttagtaggtctttgaagacaatataagttgaagaaaattcatttc 31262241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 22525736 - 22525680
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaag 115  Q
    ||||||||||| ||| ||||||| ||||  ||||||||||| |||||||||||||||    
T  22525736 tcttagaaggtatttgaagacaacacaaagtgaagaaaatttatttcaagtttcaag 22525680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 16593667 - 16593616
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||    
T  16593667 tcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagtt 16593616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 27417175 - 27417102
Alignment:
Q  63 agaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    ||||||| ||| || |||||||||  |||||||||||||||||||||| ||||   |||| |||| ||||||||    
T  27417175 agaaggtttttgaaaacaatacaaagtgaagaaaattcatttcaagttccaaggagtttccagacggaagaacg 27417102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 39730661 - 39730730
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    |||||||||  |||||  ||||||||||  |||||| |||| ||||||||||| |||||||||| |||||    
T  39730661 aagacaataagagttggggaaaattcatcccaagttccaaggcatttcaagacggaagaacgctaaaaaa 39730730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 12363402 - 12363450
Alignment:
Q  94 aaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaa 142  Q
    |||| |||| ||||||| ||| |||||||||||| ||||||||||||||    
T  12363402 aaaaatcatctcaagttccaacacatttcaagacggaagaacgctcaaa 12363450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 24434840 - 24434896
Alignment:
Q  82 tacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    |||||||||||| |||||||| |||| || |||| ||||||||||  ||||||||||    
T  24434840 tacaagttgaaggaaattcatatcaaattccaaggcatttcaagagggaagaacgct 24434896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 27097718 - 27097633
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||| |||||| ||||||| ||||||||    
T  27097718 tcttagaaggtctttgaagacaatacaagttgaagaaaattcaattcaagttccaaggcattgcaagacggaagaacactcaaaaa 27097633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 5153961 - 5154068
Alignment:
Q  64 gaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac-aaaactgtaaaa 161  Q
    |||||| ||| ||||||||| ||  |||| ||||||||||||||||| ||||||||| |||||| |||||| |||| |||||||||| ||||||| ||||    
T  5153961 gaaggtttttgaagacaatataacatgaataaaattcatttcaagttccaagacattgcaagacggaagaatgctcgaaaaagggacgaaaactgcaaaa 5154060  T
Q  162 tttgcaca 169  Q
    ||| ||||    
T  5154061 tttacaca 5154068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 32239499 - 32239563
Alignment:
Q  72 ttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    |||||||||||| ||  ||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  32239499 ttaaagacaataaaaagtgaagaaaattcatttcaagtttcaaggcattgcaagacagaaaaacg 32239563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 6888109 - 6888023
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaag 145  Q
    ||||| || |||||| |||||||||||||||||||||||| | ||||||||  |||| ||  ||||||| ||||||| |||||||||    
T  6888109 tcttaaaatgtctttgaagacaatacaagttgaagaaaatccgtttcaagtgccaagccacgtcaagacggaagaacactcaaaaag 6888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 5570056 - 5570008
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaa 107  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  5570056 tcttagaagctttttaaagacaatacaagatgaagaaaattcatttcaa 5570008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 16052193 - 16052142
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16052193 tcttagaaggtttttgaagacaatacaaaatgaagaaaattcatttcaagtt 16052142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 28292017 - 28291950
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaaga 126  Q
    ||||||||||||||| ||||||||||||  ||||||||||  |||||||||| |||| |||| |||||    
T  28292017 tcttagaaggtctttgaagacaatacaaaatgaagaaaataaatttcaagttccaagccattgcaaga 28291950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 29291968 - 29292074
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac-aaaactg 156  Q
    ||||||||||||||| ||||||| | ||  |||| |||||||||||||| || |||  |||| |||||| ||||||||| | |||||||||| |||| ||    
T  29291968 tcttagaaggtctttgaagacaacagaaagtgaaaaaaattcatttcaaattccaattcattgcaagacggaagaacgcacgaaaaagggacgaaaattg 29292067  T
Q  157 taaaatt 163  Q
    |||||||    
T  29292068 taaaatt 29292074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 13081851 - 13081798
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||||    
T  13081851 tcttagaaggttgttgaagacaatacaaaatgaagaaaattcatttcaagtttc 13081798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 14424729 - 14424616
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggacaaaa-ctg 156  Q
    ||||||||||| ||| || ||||| |||  ||||||||||||||||  ||||  |||| ||| |||||| ||||||| ||| ||||||||||||||  ||    
T  14424729 tcttagaaggtttttgaacacaattcaatgtgaagaaaattcatttatagttctaagatattgcaagacggaagaactctcaaaaaagggacaaaagatg 14424630  T
Q  157 taaaatttgcacac 170  Q
     |||||||||||||    
T  14424629 caaaatttgcacac 14424616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 30543972 - 30544035
Alignment:
Q  71 tttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaa 134  Q
    ||||||||||||| ||  |||||||||||||||||||||| |||| |||| |||| | ||||||    
T  30543972 tttaaagacaatataaagtgaagaaaattcatttcaagttccaaggcattgcaaggcggaagaa 30544035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 24120422 - 24120499
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    ||||||||||| ||  |||| |||| ||| |||||||||||||||||||||| | ||  ||||| |||| ||||||||    
T  24120422 tcttagaaggttttcgaagataataaaagatgaagaaaattcatttcaagttcctaggaatttccagacggaagaacg 24120499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 12774725 - 12774681
Alignment:
Q  94 aaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    ||||||||| |||| ||||||| ||||||||||| ||||||||||    
T  12774725 aaaattcatctcaaatttcaaggcatttcaagacggaagaacgct 12774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 30851016 - 30850944
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaa 131  Q
    |||||||| |||||| || | |||||||  ||||||||||| |||||||||| |||| |||| ||||| ||||    
T  30851016 tcttagaatgtctttgaatataatacaaagtgaagaaaattaatttcaagttccaagtcattgcaagatagaa 30850944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 31436675 - 31436742
Alignment:
Q  66 aggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaa 134  Q
    |||| ||| ||||||||||||  |||| |||||| |||||||||| |||| |||| |||||||||||||    
T  31436675 aggtatttgaagacaatacaaagtgaaaaaaatt-atttcaagttccaaggcattgcaagacagaagaa 31436742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 26499763 - 26499652
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggac-aaaactgt 157  Q
    ||||||||||| ||| ||||||||||||  | ||||||||||||||||||||||||| |||| |||||| ||| ||||||| |||| | || |||||||     
T  26499763 tcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtttcaaggcattgcaagacggaacaacgctcgaaaaagaacgaaaactgc 26499664  T
Q  158 aaaatttgcaca 169  Q
    ||||||||||||    
T  26499663 aaaatttgcaca 26499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 9943066 - 9942942
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac-agaagaacgctcaaaaagggac-aaaactg 156  Q
    ||||| ||||| ||||||||||||  ||||||  |||||||||| ||||||| |||||||||||||||| |||| || |||| ||||||||| |||||||    
T  9943066 tcttataaggtttttaaagacaatgtaagttggggaaaattcatctcaagttccaagacatttcaagacaagaaaaatgctcgaaaagggacgaaaactg 9942967  T
Q  157 taaaatttgcacacgggctactgcc 181  Q
     ||||||||||  | ||||||||||    
T  9942966 caaaatttgcatccaggctactgcc 9942942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 16387141 - 16387092
Alignment:
Q  89 tgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  16387141 tgaagaaaattcgtttcaagtttcaaggtatttcaagacagaagaacgct 16387092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 15575122 - 15575173
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||||| || ||||||||||||  ||||||||||||||||||||||    
T  15575122 tcttagaaggtcgttgaagacaatacaaagtgaagaaaattcatttcaagtt 15575173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 24618081 - 24618117
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaa 95  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24618081 tcttagaagatctttaaagacaatacaagttgaagaa 24618117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 26512695 - 26512615
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc 139  Q
    ||||| ||||||| | || |||||||||| |||  ||||||||| |||||||||||| ||||||||||  ||| |||||||    
T  26512695 tcttaaaaggtctgtgaacacaatacaagatgataaaaattcatctcaagtttcaaggcatttcaagaaggaaaaacgctc 26512615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 26517811 - 26517731
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc 139  Q
    ||||| ||||||| | || |||||||||| |||  ||||||||| |||||||||||| ||||||||||  ||| |||||||    
T  26517811 tcttaaaaggtctgtgaacacaatacaagatgataaaaattcatctcaagtttcaaggcatttcaagaaggaaaaacgctc 26517731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 17860365 - 17860314
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| |||  |||||||||||  ||||||||||||||||||||||    
T  17860365 tcttagaaggtttttgtagacaatacaaagtgaagaaaattcatttcaagtt 17860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 23419023 - 23418983
Alignment:
Q  62 tagaaggtctttaaagacaatacaagttgaagaaaattcat 102  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  23419023 tagaaggtttttgaagtcaatacaagttgaagaaaattcat 23418983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 32930361 - 32930294
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 127  Q
    |||| |||||| ||||||||||||||||||||  ||||||| ||  |||||| |||| |||||||||||    
T  32930361 tcttggaaggtttttaaagacaatacaagttg-ggaaaattaatcacaagttccaaggcatttcaagac 32930294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 26102257 - 26102336
Alignment:
Q  61 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctca 140  Q
    ||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  26102257 ttagaaggtttttgaagacaatacaagttgaggaaaattcatctcaagtttcaaggaatttcaagactgaagaacgctca 26102336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 23505970 - 23506033
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 138  Q
    ||||||||||||  |||||||||||||||||||||| ||||||| | |||||||||| ||||||    
T  23505970 aagacaatacaaagtgaagaaaattcatttcaagttccaagacaatgcaagacagaataacgct 23506033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 19257722 - 19257632
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaaggga 148  Q
    ||||||||||||||| ||||||||||||  ||||||||||| ||||||| || |||| |||| |||||| ||| || |||| |||||||||    
T  19257722 tcttagaaggtctttgaagacaatacaaagtgaagaaaatttatttcaatttccaaggcattgcaagacggaaaaatgctcgaaaaaggga 19257632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 52271160 - 52271067
Alignment:
Q  60 cttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaa 153  Q
    |||||||||| ||| ||||||||||||  ||||||||||||||||||| || ||||  ||| |||||| ||||||||  | ||||||| |||||    
T  52271160 cttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaaattccaaggaattgcaagacggaagaacgggcgaaaagggtcaaaa 52271067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 25126678 - 25126766
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaaggg 147  Q
    ||||||||  ||||| || |||||||||  |||||||||||||||||||||| |||| |||| |||||| |||  ||||| ||||||||    
T  25126678 tcttagaaaatctttgaatacaatacaaaatgaagaaaattcatttcaagttccaaggcattgcaagacggaaacacgctaaaaaaggg 25126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 11769910 - 11769859
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  11769910 tcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagtt 11769859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 25373944 - 25373995
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||||  || ||||||||||||| ||||||||||||||||||||||    
T  25373944 tcttagaaggttgtttaagacaatacaagatgaagaaaattcatttcaagtt 25373995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 25494405 - 25494352
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||| ||||    
T  25494405 tcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaaatttc 25494352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 25665674 - 25665609
Alignment:
Q  71 tttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    ||||||||||||||||  ||||||||| |||||| ||||| |||| |||| |||||| ||||||||    
T  25665674 tttaaagacaatacaaagtgaagaaaaatcatttgaagttccaaggcattgcaagacggaagaacg 25665609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 26854236 - 26854151
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||||||| | ||| ||||||||||||  |||||||||||||||| ||||| |||| |||| |||||  ||||||| || |||||    
T  26854236 tcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagatggaagaacactgaaaaa 26854151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 30675682 - 30675733
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| ||| |||| |||||||  ||||||||||||||||||||||    
T  30675682 tcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagtt 30675733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 15850929 - 15850860
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    |||||||||||||||  |||||||||||  ||| ||||||| ||||| ||||  ||||||||||| ||||    
T  15850929 aagacaatacaagtttgagaaaattcatcccaaatttcaaggcattttaagaaggaagaacgctcgaaaa 15850860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 27461097 - 27461012
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||| ||||| ||| |||||||||||||||   ||| ||||||  |||||| |||| |||||||||||  |||||||||| ||||    
T  27461097 tcttaaaaggtttttgaagacaatacaagtttgggaatattcatcacaagttccaaggcatttcaagacgaaagaacgctcgaaaa 27461012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 21548862 - 21548914
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 127  Q
    |||| ||||||||||||| ||||||||||| ||||| |||| |||| ||||||    
T  21548862 aagataatacaagttgaaaaaaattcatttgaagttccaaggcattacaagac 21548914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 228103 - 228026
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    ||||||||||| ||| ||||||||||||  |||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  228103 tcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaagacattgcaagacggaagaacg 228026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 8308952 - 8308843
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaaggga-caaaactgt 157  Q
    ||||||||||||||| ||||||||||||  | ||||| |||||| ||||||| ||||  ||| |||||| ||||||||||||||||||||  |||||||     
T  8308952 tcttagaaggtctttgaagacaatacaaaataaagaagattcatatcaagttccaaggtattgcaagacggaagaacgctcaaaaagggaggaaaactgc 8308853  T
Q  158 aaaatttgca 167  Q
    ||||||||||    
T  8308852 aaaatttgca 8308843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 1074667 - 1074728
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    ||||||||||||| ||||||||| | |||||||||| |||||||||||||||| ||||||||    
T  1074667 aagacaatacaagatgaagaaaagtaatttcaagttccaagacatttcaagacggaagaacg 1074728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 18496779 - 18496840
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    |||| |||||||| |||||||||||||||||||||| |||| |||||||||||  |||||||    
T  18496779 aagaaaatacaagatgaagaaaattcatttcaagttccaaggcatttcaagacgtaagaacg 18496840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 29544718 - 29544769
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  29544718 tcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagtt 29544769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 7372485 - 7372434
Alignment:
Q  58 atcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  7372485 atcttagaagatttttaaagacaatacaag-tgaagaaaatttatttcaagtt 7372434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 20017151 - 20017202
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||    
T  20017151 tcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagtt 20017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 25706352 - 25706446
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaa 153  Q
    |||| |||||| ||| ||||||||| ||||||  ||||||||||  |||||| || |||| ||||| || ||||||||||| || | ||||||||    
T  25706352 tcttggaaggtttttgaagacaatataagttggggaaaattcatcccaagttccatgacaattcaatacggaagaacgctcgaagaaggacaaaa 25706446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 4828985 - 4829042
Alignment:
Q  58 atcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaag 115  Q
    |||||||||| | ||| ||||||||||||  |||||| ||||||||||||||| ||||    
T  4828985 atcttagaagttatttgaagacaatacaaagtgaagataattcatttcaagttccaag 4829042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 21545743 - 21545690
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    |||||||| || ||| ||||||||| ||  ||||||||||||||||||||||||    
T  21545743 tcttagaaagtatttgaagacaataaaaagtgaagaaaattcatttcaagtttc 21545690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 24596904 - 24596852
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 127  Q
    ||||||||||||  |||||||||||||||| ||||| |||| |||| ||||||    
T  24596904 aagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagac 24596852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 19763802 - 19763671
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggacaaaa-ctg 156  Q
    ||||||||||| ||| |||| |||||||  |||||||||||||||||||||| |||   |||  ||||  ||||||||||| ||||||||||||||  ||    
T  19763802 tcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttccaaaggattgaaagatggaagaacgctcgaaaaagggacaaaagttg 19763703  T
Q  157 taaaatttgcacacgggctactgcctgatgtg 188  Q
     |||||||||||| ||||| |||| |||||||    
T  19763702 caaaatttgcacatgggctgctgcttgatgtg 19763671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 17695377 - 17695288
Alignment:
Q  61 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac 149  Q
    ||||||||| ||| ||||||||||||||||  ||||||||||   ||||| |||| ||||||||||| ||||||||||| ||||||||||    
T  17695377 ttagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaagaccgaagaacgctcgaaaaagggac 17695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 18178300 - 18178384
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    |||| |||||||||| |||| ||||||| ||||| ||||||||| ||||||| |||| | ||||||||| ||||||||||||||||    
T  18178300 tcttggaaggtctttgaagataatacaaattgaataaaattcatctcaagttccaaggc-tttcaagacggaagaacgctcaaaaa 18178384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 7742786 - 7742728
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagac 117  Q
    ||||||||||||||| ||||||||||||  ||||||||| || ||||||||||||||||    
T  7742786 tcttagaaggtctttgaagacaatacaaagtgaagaaaaatcgtttcaagtttcaagac 7742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 11274246 - 11274195
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||||||| ||||||||||||| ||| |||| |||||||||||||    
T  11274246 tcttagaaggtctttgaagacaatacaagatgatgaaatttcatttcaagtt 11274195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 16622592 - 16622542
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  16622592 tcttagaaggt-tttgaagacaatacaaattgaagaaaattcatttcaagtt 16622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 26070678 - 26070757
Alignment:
Q  65 aaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||| ||| |||||||| ||||||  |||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||    
T  26070678 aaggtttttgaagacaatgcaagttagagaaaattcagttcaagttccaaggcatttcaagacggaagaaggctcgaaaa 26070757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 26329985 - 26329935
Alignment:
Q  60 cttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  26329985 cttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagtt 26329935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 16634245 - 16634298
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    ||||||||||| ||| |||| |||||||| |||| |||||||||||||||||||    
T  16634245 tcttagaaggtttttgaagaaaatacaagatgaaaaaaattcatttcaagtttc 16634298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 18872952 - 18872908
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacat 119  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||    
T  18872952 aagacaatacaaattgaagaaaattcatttgaagttccaagacat 18872908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 30072314 - 30072365
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    ||||| ||||| ||||||||||||||||  |||||||| |||||||||||||    
T  30072314 tcttaaaaggtttttaaagacaatacaaagtgaagaaatttcatttcaagtt 30072365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 18452728 - 18452675
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    ||||| ||||| ||| || |||||||||  ||||||||||||||||||||||||    
T  18452728 tcttataaggttttttaaaacaatacaaagtgaagaaaattcatttcaagtttc 18452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 19543040 - 19542972
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 127  Q
    ||||||||||| ||| ||||||||||||  |||||||||||||||||||||| |||| |||| ||||||    
T  19543040 tcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaagac 19542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 21829044 - 21828977
Alignment:
Q  64 gaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaa 131  Q
    |||||||||| ||||||||| ||||| ||||| |||||||| ||||| |||| |||||||||||||||    
T  21829044 gaaggtctttgaagacaatataagttaaagaatattcattttaagttccaaggcatttcaagacagaa 21828977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 18474369 - 18474445
Alignment:
Q  60 cttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    |||||||||| ||| ||||||||||||  |||||||||||||||||||||| |||  |||| ||||||  |||||||    
T  18474369 cttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaatgcattgcaagacgaaagaacg 18474445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 19219127 - 19219068
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagaca 118  Q
    ||||||||||| ||| ||||||||||||  |||| |||||||||||||| || |||||||    
T  19219127 tcttagaaggtttttgaagacaatacaaagtgaataaaattcatttcaaattccaagaca 19219068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 25883301 - 25883352
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||    
T  25883301 tcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagtt 25883352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 33577942 - 33578004
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgc 137  Q
    ||||||||||| ||||   |||| |||| |||||||||||||||||||||||  |||||||||    
T  33577942 aagacaatacatgttgggaaaaaatcatctcaagtttcaagacatttcaagatggaagaacgc 33578004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 5632459 - 5632398
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatt 120  Q
    ||||| ||||| ||| |||| |||| || ||||||||||||||||||||||| |||| ||||    
T  5632459 tcttataaggtatttgaagataataaaaattgaagaaaattcatttcaagttccaaggcatt 5632398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 19263804 - 19263767
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttc 112  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  19263804 aagacaatacaaagtgaagaaaattcatttcaagtttc 19263767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 21653561 - 21653630
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||||||| ||||||   |||||||||  ||||||| ||| ||||||||||| ||||||||||| ||||    
T  21653561 aagacaataaaagttgggcaaaattcatcccaagttttaaggcatttcaagaccgaagaacgctcgaaaa 21653630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 26418918 - 26418994
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaac 135  Q
    ||||||||||| |||||||| ||||||| |||  ||||||||||  || ||| |||| ||||||||||  |||||||    
T  26418918 tcttagaaggtttttaaagaaaatacaaattggggaaaattcatcccatgttgcaaggcatttcaagatggaagaac 26418994  T

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Target: scaffold0650 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 5686 - 5634
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagttt 111  Q
    |||||||||||||||||||| |||||||  ||||||||||||| |||||||||    
T  5686 tcttagaaggtctttaaagaaaatacaaagtgaagaaaattcaattcaagttt 5634  T

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Target: scaffold0282 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 22527 - 22479
Alignment:
Q  62 tagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 110  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  22527 tagaaggttttttaagacaatacaaggtgaagaaaattcatttcaagtt 22479  T

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Target: scaffold1149 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 2001 - 2062
Alignment:
Q  75 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 136  Q
    ||||||||||||  | |||||||||||||||||||| ||| || || |||||||||||||||    
T  2001 aagacaatacaaagtaaagaaaattcatttcaagttccaatactttgcaagacagaagaacg 2062  T

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Target: scaffold0190 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 11614 - 11530
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 144  Q
    ||||| ||||| ||| ||||||||||||  |||||||||||||||||||| | |||| |||| |||||| || ||| |||||||||    
T  11614 tcttataaggtatttgaagacaatacaaagtgaagaaaattcatttcaag-tccaaggcattgcaagacggatgaatgctcaaaaa 11530  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 21596 - 21648
Alignment:
Q  59 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagttt 111  Q
    ||||||||||| ||||||||||||||||  | ||||| |||||||||||||||    
T  21596 tcttagaaggtttttaaagacaatacaaagttaagaatattcatttcaagttt 21648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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