View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1322_low_5 (Length: 522)
Name: NF1322_low_5
Description: NF1322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1322_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 82 - 513
Target Start/End: Complemental strand, 51351029 - 51350594
Alignment:
| Q |
82 |
ggtggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttctttgatt--- |
178 |
Q |
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| T |
51351029 |
ggtggtgaaatcaaaggctgtgttcctgctctaggagctgatcaatttgatgacaagaatccaaaggaccgtctccaactagctagcttctttgattaat |
51350930 |
T |
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| Q |
179 |
-ggtttctgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgc |
277 |
Q |
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| T |
51350929 |
tggtttttgttagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgc |
51350830 |
T |
|
| Q |
278 |
actaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcct |
377 |
Q |
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| T |
51350829 |
actaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcct |
51350730 |
T |
|
| Q |
378 |
ccatatgttttatatatagctattcaagttgaatgtgtgtcaggtgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcg |
477 |
Q |
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| T |
51350729 |
ccatatgttttatatatagctattcaagttgaatgtgtgtcagatgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcg |
51350630 |
T |
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| Q |
478 |
ttttcgaacgtgtgagagttttagtattttgacaat |
513 |
Q |
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| T |
51350629 |
ttttcgaacgtgtgagagttttagtattgtgacaat |
51350594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 82 - 357
Target Start/End: Complemental strand, 51360398 - 51360104
Alignment:
| Q |
82 |
ggtggtgaaatcaaaggctgtgttcatgctctaggagctgatcaatttgatgacaagaatccaaaggatcgtctccaactagctagcttctttgattggt |
181 |
Q |
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||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||| | ||||||||| || |||||||||||| |||||||| |||||| |
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| T |
51360398 |
ggtggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagcttcttcaattggt |
51360299 |
T |
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| Q |
182 |
ttctgtt-------------------agcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctctt |
262 |
Q |
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|| |||| |||||||||| ||| ||||||||| ||||||| || ||| | |||||||||||||||||||||||||||| |
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| T |
51360298 |
ttttgtttagtattacaattggtgctagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttcttatatctctctc |
51360199 |
T |
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| Q |
263 |
atatgcttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagg |
357 |
Q |
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| T |
51360198 |
atgttctgcctctgcacttatttgcattgttgctggaaagagattctatcgtaaacgaattcctggggagagtccattgttgagtattttacagg |
51360104 |
T |
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