View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13230_high_2 (Length: 457)
Name: NF13230_high_2
Description: NF13230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13230_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 40207158 - 40206730
Alignment:
| Q |
13 |
aatatcagaatcaaggtatataactcgcttgacataaagaggaagaatatcagaaaggtagattcttgcatagttaagaggctgatccaatgcttgacga |
112 |
Q |
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| T |
40207158 |
aatatcagaatcaaggtatataactcgcttgacataaagaggaagaatatcagaaaggtagattcttgcatagttaagaggctgatccaatgcttgacga |
40207059 |
T |
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| Q |
113 |
atcgatttcgatatttttccgcgtaccctattggattcaaagcgataaatcttaaatttgaggtaagggaaggttgatcttatgcttagaaaaacctgag |
212 |
Q |
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| T |
40207058 |
atcgatttcgatatttttccgtgtaccctattggattcaaagcgataaatcttaaatttgaggtaagggaaggttgatcttatgattagaaaaacctgag |
40206959 |
T |
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| Q |
213 |
gctcaaaccttgcccaaaggaaatgaaactcaaca-tttcaggacaagttgaatgttgcaatatggagaggacagcagccatggtccctctgagataatt |
311 |
Q |
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| T |
40206958 |
gctcaaaccttgcccaaaggaaatgaaactcaacattttcaggacaagttgaatgttgcaatatggagaggacagcagccatggtccctctgagataatt |
40206859 |
T |
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| Q |
312 |
tgagtccaatgtcatggaaatgtgaatgctttctttgttgcatgtattgccgttgcgaaaagcaggggcttctctaaatataggggcatcgagggaaggc |
411 |
Q |
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| T |
40206858 |
tgagtccaatgtcatggaaatgtgaatgctttctttgttgcatgtattgccgttgcgaaaagcaggggcttctctaaatataggggcatcgagggaaggc |
40206759 |
T |
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| Q |
412 |
tttcgtacgacatcaagatggatggaggt |
440 |
Q |
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| T |
40206758 |
tttcgtacgacatcaagatggatggaggt |
40206730 |
T |
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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 389
Target Start/End: Original strand, 37501237 - 37501569
Alignment:
| Q |
58 |
aatatcagaaaggtagattcttgcatagttaagaggctgatccaatgcttgacgaatcgatttcgatatttttccgcgtaccctattggattcaaagcga |
157 |
Q |
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||||||||||| || |||||||||||||| |||||||| ||||| || || ||||| ||||| || |||||| | ||||||||| | |||||||| ||| |
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| T |
37501237 |
aatatcagaaatatatattcttgcatagtttagaggctggtccaaggcctggcgaatggatttggagattttttcacgtaccctacttgattcaaatcga |
37501336 |
T |
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| Q |
158 |
taaatcttaaatttgaggtaagggaaggttgatcttatg-cttagaaaaacctgaggctcaaaccttgcccaaaggaaatgaaactcaacattt-cagga |
255 |
Q |
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| T |
37501337 |
tatatcttgaacttgaggtatggaaatgtggatttgatggcgta-atagacctcaggttcaaacgttgcccaaagaaaatggaaatccacattttcagga |
37501435 |
T |
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| Q |
256 |
caagttgaatgttgcaatatggagaggacagcagccatggtccctctgagataatttgagtccaatgtcatggaaatgtgaatgctttctttgttgcatg |
355 |
Q |
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| T |
37501436 |
catgttgagtgttgtaagatggagagaatggctcccattgtacctcttagatagtttgagtcaagtgtcatggcaatgtgtattctttcttggttgcacg |
37501535 |
T |
|
| Q |
356 |
tattgccgttgcgaaaagcaggggcttctctaaa |
389 |
Q |
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| T |
37501536 |
catcaccgttgcgaaaggaaggggcttctctaaa |
37501569 |
T |
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