View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13230_high_6 (Length: 345)

Name: NF13230_high_6
Description: NF13230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13230_high_6
NF13230_high_6
[»] chr7 (8 HSPs)
chr7 (11-327)||(30483761-30484077)
chr7 (152-214)||(23971191-23971253)
chr7 (183-222)||(1554908-1554947)
chr7 (139-214)||(16866407-16866482)
chr7 (141-220)||(18731990-18732069)
chr7 (139-189)||(5026169-5026219)
chr7 (139-192)||(44816496-44816549)
chr7 (139-223)||(6803336-6803420)
[»] chr2 (12 HSPs)
chr2 (139-216)||(43398842-43398919)
chr2 (141-195)||(944802-944856)
chr2 (138-222)||(24037582-24037666)
chr2 (139-219)||(38935364-38935444)
chr2 (153-224)||(4445860-4445931)
chr2 (139-222)||(10459295-10459378)
chr2 (139-222)||(31469100-31469183)
chr2 (139-224)||(4224973-4225058)
chr2 (158-223)||(16564424-16564489)
chr2 (139-195)||(7932772-7932828)
chr2 (141-213)||(18007506-18007578)
chr2 (139-215)||(20559987-20560063)
[»] chr6 (3 HSPs)
chr6 (139-219)||(31323843-31323923)
chr6 (139-192)||(33822317-33822370)
chr6 (139-222)||(2282427-2282510)
[»] scaffold0097 (1 HSPs)
scaffold0097 (139-222)||(37940-38023)
[»] chr4 (4 HSPs)
chr4 (146-214)||(5496857-5496925)
chr4 (139-214)||(54235228-54235303)
chr4 (140-214)||(12276850-12276924)
chr4 (159-219)||(4423198-4423258)
[»] chr3 (3 HSPs)
chr3 (139-222)||(32221468-32221551)
chr3 (151-218)||(26104259-26104326)
chr3 (141-221)||(15282638-15282718)
[»] chr1 (6 HSPs)
chr1 (139-222)||(3739812-3739895)
chr1 (142-222)||(3739846-3739926)
chr1 (135-219)||(24922402-24922485)
chr1 (151-214)||(27527711-27527774)
chr1 (139-221)||(29855087-29855169)
chr1 (139-188)||(19758303-19758352)
[»] scaffold0034 (1 HSPs)
scaffold0034 (141-223)||(94977-95059)
[»] chr5 (8 HSPs)
chr5 (139-196)||(968306-968363)
chr5 (141-222)||(2424436-2424517)
chr5 (139-216)||(42324884-42324961)
chr5 (139-222)||(39030561-39030644)
chr5 (139-214)||(39030592-39030667)
chr5 (141-223)||(15119328-15119410)
chr5 (141-203)||(28023940-28024002)
chr5 (139-196)||(38958090-38958147)
[»] chr8 (3 HSPs)
chr8 (139-222)||(11114265-11114348)
chr8 (141-224)||(33557771-33557854)
chr8 (139-196)||(13209993-13210050)
[»] scaffold0067 (1 HSPs)
scaffold0067 (145-219)||(35975-36049)
[»] scaffold0009 (1 HSPs)
scaffold0009 (141-195)||(51246-51300)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 30483761 - 30484077
Alignment:
Q  11 cacagaaaacaaaacatgagcaaataataacctgattgttggaatatttttgttaaaacaccataagtcatagtattttgtttaccaaagaaagtagctg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30483761 cacagaaaacaaaacatgagcaaataataacctgattgttggaatatttttgttaaaacaccataagtcatagtattttgtttaccaaagaaagtagctg 30483860  T
Q  111 tatttaacgatttatcaaaacttcatagacaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttata 210  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30483861 tatttagcgatttaccaaaacttcgtagacaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttctttata 30483960  T
Q  211 ttttaggacggaaaatatttattaaacacacctcatacatagtgtcggatataaggcccatcccatgcacaaatggtataaaagcataagcatcaccgtc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30483961 ttttaggacggaaaatatttattaaacacacctcatacatagtgtcggatataaggcccatcccatgcacaaatggtataaaagcataagcatcaccgtc 30484060  T
Q  311 aaatattgggtccgtga 327  Q
    |||||| ||||||||||    
T  30484061 aaatatcgggtccgtga 30484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 23971253 - 23971191
Alignment:
Q  152 tatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    |||||||||||||||||| |||||| |||||||||||||||||   ||||||| |||||||||    
T  23971253 tatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttt 23971191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 1554908 - 1554947
Alignment:
Q  183 aacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  1554908 aacttttattgaccaatttttgtttatattttaggacgga 1554947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 16866482 - 16866407
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    ||||||||||| |||||| ||| |||||||| ||| || |||| ||||| |||||| | ||||||| |||||||||    
T  16866482 acaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatatttt 16866407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 18732069 - 18731990
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacg 220  Q
    ||||||||| |||||| |||||||||||  |||| | ||||||| |||| |||| | ||||||| ||||||||| |||||    
T  18732069 aaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg 18731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 5026169 - 5026219
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttat 189  Q
    |||||||||||  |||||||| ||||||||| |||||| ||||||||||||    
T  5026169 acaaaagttaatatatttagtccaaaatttgtaccaaatacatcaacttat 5026219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 44816496 - 44816549
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatatt 192  Q
    ||||||||||| |||||| |||||||||||| |||||| ||||||  |||||||    
T  44816496 acaaaagttaatgtatttggttcaaaatttgtaccaaatacatcagtttatatt 44816549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 6803336 - 6803420
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaa 223  Q
    ||||||||||| |||||||||| |||||||| |||||| ||  |||||| | |||||   |||||| ||  ||||||||||||||    
T  6803336 acaaaagttaatgtatttagtttaaaatttgtaccaaatacgccaacttgtgttgactcgtttttgcttgcattttaggacggaa 6803420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 43398919 - 43398842
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttag 216  Q
    ||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||| ||||||  ||| |||||||    
T  43398919 acaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacattttag 43398842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 944802 - 944856
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgac 195  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||||| |||||    
T  944802 aaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgac 944856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 24037666 - 24037582
Alignment:
Q  138 gacaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    |||| ||||| | |||||| |||||||||||| |||||| | |||||||||| |||||  ||||||| ||| |||||||||||||    
T  24037666 gacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacgga 24037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 38935444 - 38935364
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggac 219  Q
    ||||||||||| |||||| ||||||||| || | |||| |||||||||||| |||||  ||||||| ||||||||| ||||    
T  38935444 acaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttgggac 38935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 4445931 - 4445860
Alignment:
Q  153 atttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaaa 224  Q
    |||| |||||||||||| |||||| ||||||| ||||||| ||  ||||||| ||||||||| ||| |||||    
T  4445931 attttgttcaaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttgggatggaaa 4445860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 10459295 - 10459378
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| |||||| |||||||||||| | || |  ||||||||||| |||||| || |||| ||| ||||| |||||||    
T  10459295 acaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttgggacgga 10459378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 31469100 - 31469183
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| |||||| ||| |||||||| | |||| |||| |||||   |||||| ||||||| ||||||||| |||||||    
T  31469100 acaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 31469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 4225058 - 4224973
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaaa 224  Q
    |||||||||| |||||||  ||||||||||  |||| | ||||||| |||| |||||| | ||||  ||||||||||| |||||||    
T  4225058 acaaaagttatcgtatttgattcaaaatttataccagatacatcaatttatgttgaccaacttttacttatattttagaacggaaa 4224973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 16564424 - 16564489
Alignment:
Q  158 gttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaa 223  Q
    |||||||||||| |||||| |||||||||||| |||||  ||||||  ||| ||||| ||||||||    
T  16564424 gttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacggaa 16564489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 7932772 - 7932828
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgac 195  Q
    |||||||||||||||||| |||||||||||  | || | |||||||||||| |||||    
T  7932772 acaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgac 7932828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 18007578 - 18007506
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattt 213  Q
    |||| ||||||||||| || ||||||||| |||||| | ||||||||   |||| | ||||||||||||||||    
T  18007578 aaaaattaacgtatttggtccaaaatttgtaccaaatatatcaactttctttgatcaatttttgtttatattt 18007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 20559987 - 20560063
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttta 215  Q
    |||||| |||| ||||||||||  ||||||  ||| || |||||||||||  |||| ||| ||||||||||||||||    
T  20559987 acaaaaattaatgtatttagtttgaaatttatacctaaaacatcaacttaagttgatcgacttttgtttatatttta 20560063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 31323843 - 31323923
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggac 219  Q
    ||||||||||| |||||| |||||||||||| |||| | |||||||||||| |||||| ||||||| ||| ||||| ||||    
T  31323843 acaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttgggac 31323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 33822317 - 33822370
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatatt 192  Q
    |||||||||||  |||||||||||||||||| | |||| |||||||||||||||    
T  33822317 acaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatatt 33822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 2282427 - 2282510
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| ||||||||||||||| ||| | |||| ||||||| |||| || ||  ||||||| |||||| || |||||||    
T  2282427 acaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattgggacgga 2282510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 37940 - 38023
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| |||||| ||| |||||||  |||||| ||||||| ||||||||||   |||||||||| |||||||||||||    
T  37940 acaaaagttaatgtatttggtttaaaatttataccaaatacatcaatttatattgactcgtttttgtttacattttaggacgga 38023  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 5496925 - 5496857
Alignment:
Q  146 ttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    |||| |||||| |||||||||||| |||||| | ||||||||||||||||  ||||||||||| |||||    
T  5496925 ttaatgtatttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 54235303 - 54235228
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    ||||||||||| |||||| |||||||||||| || ||| ||||||| ||||||||||  ||||||| ||| |||||    
T  54235303 acaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacatttt 54235228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 12276850 - 12276924
Alignment:
Q  140 caaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    |||||||||| ||||||  ||||||||||  || ||| |||||||||||| |||||| ||||||| |||||||||    
T  12276850 caaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatatttt 12276924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 4423198 - 4423258
Alignment:
Q  159 ttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggac 219  Q
    ||||||||||| |||||| ||||||||||||||||| | ||||||| ||| ||||| ||||    
T  4423198 ttcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttgggac 4423258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 32221551 - 32221468
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| |||||| |||||||||||| |||||| ||||||| ||||  ||| | ||||||| ||| ||||| |||||||    
T  32221551 acaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggacgga 32221468  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 26104259 - 26104326
Alignment:
Q  151 gtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttagga 218  Q
    ||||||||||||||||||| | |||||| ||||| |||| |||||  ||||||| ||| |||||||||    
T  26104259 gtatttagttcaaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacattttagga 26104326  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 15282718 - 15282638
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgg 221  Q
    ||||||||| ||||||  || |||||||| | || |  ||||||||||| |||| | ||||||||||||||||| ||||||    
T  15282718 aaaagttaatgtatttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttgggacgg 15282638  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 3739895 - 3739812
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| |||||| ||| |||||||| |||||| |||| |||||   |||||| ||||||| ||||||||| |||||||    
T  3739895 acaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 3739812  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 3739846 - 3739926
Alignment:
Q  142 aaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    |||||||| |||||| || |||| |||  |||||| |||| ||||| | |||||| ||||||| |||||||||||||||||    
T  3739846 aaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttaggacgga 3739926  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 24922402 - 24922485
Alignment:
Q  135 atagacaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggac 219  Q
    ||||||||||||| | || |||| |||||||| | ||||||| |||||||||| |||||||  ||||||||| ||||||| ||||    
T  24922402 atagacaaaagtttatgtttttaattcaaaatgtagaccaaatacatcaactt-tattgactcatttttgttgatatttttggac 24922485  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 27527774 - 27527711
Alignment:
Q  151 gtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    |||||| |||||||||||  |||| | ||||||||||||||| ||| |||||| ||||||||||    
T  27527774 gtatttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatatttt 27527711  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 29855087 - 29855169
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgg 221  Q
    ||||||||| | |||||| ||| |||||||| || ||| |||| ||||| | |||| | ||||||| ||||||||||||||||    
T  29855087 acaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatattttaggacgg 29855169  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 19758352 - 19758303
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaactta 188  Q
    ||||||||||| |||||||||| | |||||| |||||| |||||||||||    
T  19758352 acaaaagttaatgtatttagtttataatttgtaccaaatacatcaactta 19758303  T

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Target: scaffold0034 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 94977 - 95059
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaa 223  Q
    |||| |||| |||||  |||||||||||| |||||| |||||||||||| |||||| ||||||  ||| |||||| |||||||    
T  94977 aaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttttattacattttaagacggaa 95059  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 968363 - 968306
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgacc 196  Q
    |||||| ||||  |||||||||||||||||| |||||| ||||||||||| |||||||    
T  968363 acaaaaattaatatatttagttcaaaatttgtaccaaatacatcaacttaaattgacc 968306  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 2424517 - 2424436
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||| |||||| |||||||||||| |||| | |||||| ||||| || ||  ||||||| ||||||||||| |||||    
T  2424517 aaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatattttagcacgga 2424436  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 42324961 - 42324884
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttag 216  Q
    ||||||||||| ||||||  || |||||||  |||||| ||||||| ||||||||||| |||||  ||||||||||||    
T  42324961 acaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaattttaatttatattttag 42324884  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 39030644 - 39030561
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    ||||||||||| |||||| || |||| |||  |||||| |||| ||||| | |||||| ||||||| ||||||||||| |||||    
T  39030644 acaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttagaacgga 39030561  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 39030592 - 39030667
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatatttt 214  Q
    ||||||||||| |||||| ||| |||||||| |||||| |||| ||||| | |||||  ||||||| |||||||||    
T  39030592 acaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatatttt 39030667  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 15119328 - 15119410
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaa 223  Q
    |||| |||| ||||||  ||||||||||| |  ||| | || |||||||||| ||| ||||||||||||||||||| ||||||    
T  15119328 aaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaatttttgtttatattttagaacggaa 15119410  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 28024002 - 28023940
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgattttt 203  Q
    ||||||||| ||||||  ||||||||||| || ||| |||| |||||||||||||| ||||||    
T  28024002 aaaagttaatgtatttgattcaaaatttgtacaaaatacattaacttatattgacctattttt 28023940  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 38958090 - 38958147
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgacc 196  Q
    ||||||||||| |||||| ||||||| |||| |||||| ||||||||| || ||||||    
T  38958090 acaaaagttaatgtatttggttcaaattttgtaccaaatacatcaactcatgttgacc 38958147  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 11114265 - 11114348
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacgga 222  Q
    |||||| |||| ||||| |||| |||||||  |||||| |||||||||||| |||| | ||||||  ||||||||| |||||||    
T  11114265 acaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggacgga 11114348  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 33557854 - 33557771
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggacggaaa 224  Q
    ||||||||| ||||||||||||||||||| | |||| |||| ||||||| |||| |  |||||| ||| |||||| || |||||    
T  33557854 aaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgcttacattttaagatggaaa 33557771  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 13209993 - 13210050
Alignment:
Q  139 acaaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgacc 196  Q
    ||||||||||| |||||| |||||||||||| | || | |||||||||||| ||||||    
T  13209993 acaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgacc 13210050  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 35975 - 36049
Alignment:
Q  145 gttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgaccgatttttgtttatattttaggac 219  Q
    ||||| |||||| || ||||||||| | |||| ||||||| ||||||||||  ||||||||||| ||||| ||||    
T  35975 gttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgtttacattttgggac 36049  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 51300 - 51246
Alignment:
Q  141 aaaagttaacgtatttagttcaaaatttggaccaaacacatcaacttatattgac 195  Q
    |||| |||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  51300 aaaaattaatgtatttagttcaaaatttataccaaatacatcaacttatgttgac 51246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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