View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13230_high_8 (Length: 337)
Name: NF13230_high_8
Description: NF13230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13230_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 6704583 - 6704789
Alignment:
| Q |
1 |
cctaacttgataatacatgaattccacttccaccaaacttaatacacaaacctaatgccctatgtagtagaagtcacataattatatatatgcgttgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704583 |
cctaacttgataatacatgaattccacttccaccaaacttaatacacaaacctaatgccctatgtagtagaagtcacataattatatatatgcgttgagt |
6704682 |
T |
|
| Q |
101 |
tcaatagacaaacaccttaactctattcacaatttacatgagtttgaaactcaagtaaaacagaaatggaagacaacttcctagaaatgtacttcttacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6704683 |
tcaatagacaaacaccttaactctattcacaatttacatgagtttcaaactcaaataaaacagaaatggaagacaacttccaagaaatgtacttcttacc |
6704782 |
T |
|
| Q |
201 |
aacacat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
6704783 |
aacacat |
6704789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 6704797 - 6704881
Alignment:
| Q |
241 |
agcttcccattttaatctacttttggtgaaaaacacattctattaccttttcagacattcctatatatgcaatccacaatagtat |
325 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704797 |
agcttcccattttaatatacttttggtgaaaaacacattctattaccttttcagacattcctatatatgcaatccacaatagtat |
6704881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University