View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13230_low_3 (Length: 444)
Name: NF13230_low_3
Description: NF13230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13230_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 44205986 - 44206351
Alignment:
| Q |
16 |
atgaagtcagattgaatataccaccaaatagtgttttttaacataagtactacaaataaacttgtccaaaataaataaattttaggttaaggctattctt |
115 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44205986 |
atgaagtcagattgaatgtaccactaaatagtgttttttaacataagtactacaaataaacttgtccaaaataaataaattttaggttaaggctattctt |
44206085 |
T |
|
| Q |
116 |
ggcaaatgaaaataaatattggactttttgagaaaataaatattggacttgacactcacaaaacaatactgacgttaatgcatataaaaactaatactac |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44206086 |
ggcaaatgaaaa-aaatattggactttttgagaaaataaatattggacttgacactcacaaaacaatactgacgttaatgcatataaaaactaatactac |
44206184 |
T |
|
| Q |
216 |
atcatctaattatctgtggaagatgcc-ttagtatacgtgt--gtctatctctatatgtattagttggttaatactaatttataaacgaaacgtaatcca |
312 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44206185 |
atcatctaattatgtgtggaagatgcccttagtatacgtgtgtgtctatctctatatgtattagttggttgatactaatttataaacgaaacgtaatcca |
44206284 |
T |
|
| Q |
313 |
ttagtgcaattgaagctgattcaagaagcaatatgtctacaaggttccccaaaagacctatatatat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44206285 |
ttagtgcaattgaagctgattcaagaagcaatatgtctacaaggttccccaaaagacctatatatat |
44206351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 44206367 - 44206424
Alignment:
| Q |
371 |
tatatatatgttgaatgattgaggaagctatgagagaccaaaagacaaggctatattg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44206367 |
tatatatatgttgaatgattgaggaagctatgagagaccaaaagacaaggctatattg |
44206424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University