View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13230_low_5 (Length: 388)
Name: NF13230_low_5
Description: NF13230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13230_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 79 - 370
Target Start/End: Complemental strand, 6704461 - 6704168
Alignment:
| Q |
79 |
cataatgcattgttttgagttgaacctaactgaaccattttaaaactaatttataaatgtgagaaatgcgtctatctataaatacatatttaagttcgca |
178 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704461 |
cataatgcattactttgagttgaacctaactcaaccattttaaaactaatttgtaaatgtgaggaatgcgtctatctataaatacatatttaagttcgca |
6704362 |
T |
|
| Q |
179 |
acattcaacatgggaccatgatattcttttatcattatctatattttcttttaaaaatatctaccacctctttcatatttgccatcttcctct--nnnnn |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6704361 |
acattcaacatgggaccatgatattcttttatcattatctatattttcttttaaaaatatctaccacctctttcatattcgccatcttcctctaaaaaaa |
6704262 |
T |
|
| Q |
277 |
nntgtcattgatttctaaccaaattacatgataggagatgttcttcctttcatcaattcttgaaacatctcagcacaaaaacaatacacaattc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
6704261 |
aatgtcattgatttctaaccaaattacatgataggagatgttcttcctttcatcaattcttgaaacatctcagcacacaaacattacacaattc |
6704168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University