View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13230_low_9 (Length: 311)
Name: NF13230_low_9
Description: NF13230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13230_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 162 - 303
Target Start/End: Complemental strand, 34873466 - 34873320
Alignment:
| Q |
162 |
ctgtaggacatggtaaatag--cacacacatagttaaaaaatttagtaaaagaactcgtgatgcatatgtagacaccctcct---taacatacatatctt |
256 |
Q |
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| T |
34873466 |
ctgtaggacatggtaaatagtgcacacacataattaaaaattttaataaaagaactcgtgatgcatatgtagacaccctcctaattaacatacatagctt |
34873367 |
T |
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| Q |
257 |
caagatttacagtaagaatatgttctgtgtcgataatacttggtatt |
303 |
Q |
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| T |
34873366 |
caagatttacaataagaatatgttctgtgtcgataatacttggtatt |
34873320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 34873604 - 34873489
Alignment:
| Q |
21 |
tgctccatcttgtgttttgtcgttatgattctgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgtcgactttgacatg |
120 |
Q |
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| T |
34873604 |
tgctccatcttgtgttttatcgttatgattatgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgttgactttgacatg |
34873505 |
T |
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| Q |
121 |
tgataaaatatgcacg |
136 |
Q |
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| T |
34873504 |
tgataaaataggcacg |
34873489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 34872020 - 34872135
Alignment:
| Q |
21 |
tgctccatcttgtgttttgtcgttatgattctgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgtcgactttgacatg |
120 |
Q |
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| T |
34872020 |
tgctccatcttgtgttttatcgttatgattatgatatttgattcttgtttaaatatatatttactataacatgtgaagcattgatgttgactttgacatg |
34872119 |
T |
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| Q |
121 |
tgataaaatatgcacg |
136 |
Q |
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| T |
34872120 |
tgataaaataggcacg |
34872135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 9918740 - 9918854
Alignment:
| Q |
21 |
tgctccatcttgtgttttgtcgttatgattctgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgtcgactttgacatg |
120 |
Q |
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| T |
9918740 |
tgctccatcttgtgttttatcgttatgattatgctatttgattcttgtttgaatatatatttactataacttatgaaacaatggtgttggctttgacatg |
9918839 |
T |
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| Q |
121 |
tgataaaatatgcac |
135 |
Q |
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| T |
9918840 |
tgacaaaataggcac |
9918854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 34872162 - 34872233
Alignment:
| Q |
166 |
aggacatggtaaatagcacacaca--tagttaaaaaatttagtaaaagaactcgtgatgcatatgtagacac |
235 |
Q |
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| T |
34872162 |
aggacacggtaaatagcacacacacataattgaaaattttaggaaaagaactcatgatgcatatgtagacac |
34872233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 303
Target Start/End: Original strand, 9918905 - 9919013
Alignment:
| Q |
196 |
aaaaatttagtaaaagaactcgtgatgcatatgtagacaccctccttaacat--acatatcttcaagatttacagtaaga-atatgttctgtgtcgataa |
292 |
Q |
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| T |
9918905 |
aaaaatttaggaaaagaactgattat--atatgaagacaccctccttaacactcacatagcttcaagatttacaatatgatacatgttctgtgtcaataa |
9919002 |
T |
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| Q |
293 |
tacttggtatt |
303 |
Q |
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|||| |||||| |
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| T |
9919003 |
tactcggtatt |
9919013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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