View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13231_high_13 (Length: 405)
Name: NF13231_high_13
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 3825441 - 3825192
Alignment:
| Q |
19 |
ctaaaagtcatcaagtttaaccaagctagtgctttgccgtttttcttgttggtgtttgcattgtattccagcttgtaaagactttagagccataacccta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3825441 |
ctaaaagtcatcaagtttaaccaagctagtgctttgccgtttttcttgttggtgtttgcattgtattccagcttgtaaagactttagagccataacccta |
3825342 |
T |
|
| Q |
119 |
accttgcactctttatgtaggtagatatctcgatttgatttaatatatttcattttcctttttnnnnnnnnnnnnnngaatatatcaattgaaaacaacg |
218 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
3825341 |
accttgcactctttgtgtaggtagagatctcgatttgatttaatatatttcattttccttttt------aaaaaaaagaatatatcaattgaaaactacg |
3825248 |
T |
|
| Q |
219 |
tacacctttaaatatagtttttcagagaacctttaaaaatgcttataggttcatat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3825247 |
tacacctttaaatatagtttttcagagaacctttaaaaatagttataggttcatat |
3825192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 283 - 395
Target Start/End: Complemental strand, 3825213 - 3825101
Alignment:
| Q |
283 |
aaaaatagttataggttcatatttaaagcgtggttttatcttgcaatttgtcaacagtcacgttcatcatagcataatcaactatagtttctcctcacct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3825213 |
aaaaatagttataggttcatatttaaagcgtggttttatcttgcaatttgtcaacagtcacgttcatcatagcataatcaactatagtttctcctcacct |
3825114 |
T |
|
| Q |
383 |
attatatcctatg |
395 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3825113 |
attatatcctatg |
3825101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University