View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13231_high_15 (Length: 354)
Name: NF13231_high_15
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 31943561 - 31943419
Alignment:
| Q |
1 |
gaggcagtaatacagatgtttgtttctttgcgattgaggttaggggtttatcagaaatcacaatcctggttttggatggaacatgcattgtatagatgca |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31943561 |
gaggcagtaacacagatgtttgtttctttgcgattgaggttaggggtttatcagaaatcacaatcctggttttggatggaacatgcattgtatagatgca |
31943462 |
T |
|
| Q |
101 |
ttcaatttgaccattatgtatatccatattgttcctatactca |
143 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
31943461 |
ttcaatttgacgattatgtatatccatatttttcctatactca |
31943419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 31943340 - 31943231
Alignment:
| Q |
222 |
agtcctagactagattgaatatatgctatctgtatgatggtggctcacaccttcatttttacaatcacactcctagtcaaagattactctcccaacctag |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
31943340 |
agtcctagactagattgaatatatgctatctgtatgatggtggctcacaccttcatttttacaatcacact-ctagtcaatgattactctcccaacctag |
31943242 |
T |
|
| Q |
322 |
ctcctcccacc |
332 |
Q |
| |
|
||||||||||| |
|
|
| T |
31943241 |
ctcctcccacc |
31943231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University