View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13231_high_17 (Length: 314)
Name: NF13231_high_17
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 6649142 - 6649423
Alignment:
| Q |
19 |
acatgagtcgcacgccagacacgcctttgattgtagtgtcggtactgtatcaagtcttaccatcaccatattgtaccgtgacaaatataactaaaagctt |
118 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
6649142 |
acatgagttgcacgccagacacgc-tttgattgtagtgtcggtactgcatcaagtcttaccatcaccatattataccatgacaaatataactaaaagctt |
6649240 |
T |
|
| Q |
119 |
ttcccttttcccgctatgtatggatcaatatcaccatcaccatattatttatcatgacaaataccatgttttcggaaaggtcgtctagatcaagatatag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6649241 |
ttcccttttcccgctatgtatggatcaatatcaccatcaccgtattatttatcatgacaaataccatgttttcggaaagatcgtctagatcaagatatag |
6649340 |
T |
|
| Q |
219 |
ataggaactttctttgtacagtataaattgaagacaaatagcaagaccccaaattgatctaggactaaccccaaatttgatga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6649341 |
ataggaactttctttgtacagtataaattgaagacaaatagcaagaccccaaattgatctaggactaaccccaaatttgatga |
6649423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University