View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13231_high_2 (Length: 773)

Name: NF13231_high_2
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13231_high_2
NF13231_high_2
[»] chr3 (31 HSPs)
chr3 (349-765)||(10359682-10360116)
chr3 (19-275)||(9980816-9981072)
chr3 (349-654)||(9981141-9981444)
chr3 (19-216)||(10035440-10035637)
chr3 (19-275)||(10360185-10360451)
chr3 (395-525)||(10130686-10130816)
chr3 (395-525)||(10372199-10372329)
chr3 (663-760)||(9994758-9994855)
chr3 (19-106)||(10130351-10130438)
chr3 (19-106)||(10584308-10584395)
chr3 (126-203)||(10584429-10584506)
chr3 (524-629)||(10035698-10035804)
chr3 (280-443)||(10264591-10264751)
chr3 (126-216)||(10130472-10130562)
chr3 (126-226)||(10264427-10264530)
chr3 (126-191)||(10372397-10372462)
chr3 (663-716)||(10035899-10035952)
chr3 (19-80)||(10264132-10264193)
chr3 (131-236)||(10430267-10430367)
chr3 (296-359)||(10430097-10430160)
chr3 (318-375)||(11772695-11772752)
chr3 (514-594)||(11778244-11778327)
chr3 (342-376)||(10134711-10134745)
chr3 (34-79)||(10430545-10430591)
chr3 (328-367)||(10093176-10093215)
chr3 (328-367)||(10200058-10200097)
chr3 (320-377)||(10130614-10130671)
chr3 (342-375)||(10130846-10130879)
chr3 (342-375)||(10372136-10372169)
chr3 (320-377)||(10372344-10372401)
chr3 (349-378)||(10584614-10584643)
[»] scaffold0083 (2 HSPs)
scaffold0083 (19-275)||(54065-54321)
scaffold0083 (349-654)||(53693-53996)
[»] chr2 (1 HSPs)
chr2 (126-220)||(26910551-26910640)
[»] chr8 (1 HSPs)
chr8 (469-502)||(11488900-11488933)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 349 - 765
Target Start/End: Complemental strand, 10360116 - 10359682
Alignment:
Q  349 tagggtttgtaatattcttaatttgtaacannnnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatt 448  Q
    ||||||||||||||||||||||||||||||           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360116 tagggtttgtaatattcttaatttgtaacattttttgttt-gcaacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatt 10360018  T
Q  449 tgttgaattaatattggttctaaatattcatattcctatatacatttgttgaattaacaattttgtttcttcaaaatcatatagttgatcctgattgaga 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10360017 tgttgaattaatattggttctaaatattcatattcctatatacatttgttgaattaacaattttgtttcttcaaaatcatatagttgatcctggttgaga 10359918  T
Q  549 ccttaagatccatttttcgtttcatttctcttcaagaaagtgtatatatatttgatctgaaagaatgatctgaatgaatatctgcattcctcttcattga 648  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359917 ccttaagatcca-ttttcgtttcatttctcttcgagaaagtgtatatatatttgatctgaaagaatgatctgaatgaatatctgcattcctcttcattga 10359819  T
Q  649 caaaaccttt---agct-----------------tatatgtcatctttttaagtttcactgctaaggcctaaacttgtcttctgagatagttacctttgt 728  Q
    ||||||||||   ||||                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359818 caaaacctttacaagctaaaaaacttccttgctgtataagtcatctttttaagtttcactgctaaggcctaaacttgtcttctgagatagttacctttgt 10359719  T
Q  729 cgtaaacaatgcctccaaaattcttacaacctatgct 765  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  10359718 cgtaaacaatgcctccgaaattcttacaacctctgct 10359682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 9980816 - 9981072
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980816 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 9980915  T
Q  119 caattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980916 caattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 9981015  T
Q  219 aactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 275  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  9981016 aactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgc 9981072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 349 - 654
Target Start/End: Original strand, 9981141 - 9981444
Alignment:
Q  349 tagggtttgtaatattcttaatttgtaacannnnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatt 448  Q
    ||||||||||||||||||||||||||||||           || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9981141 tagggtttgtaatattcttaatttgtaacattttttgttt-gcaacgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcatt 9981239  T
Q  449 tgttgaattaatattggttctaaatattcatattcctatatacatttgttgaattaacaattttgtttcttcaaaatcatatagttgatcctgattgaga 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9981240 tgttgaattaatattggttctaaatattcatattcctatatacatttgttgaattaacaattttgtttcttcaaaatcatatagttgatcctggttgaga 9981339  T
Q  549 ccttaagatccatttttcgtttcatttctcttcaagaaagtgtatatatatttgatctgaaagaatgatctgaatgaatatctgcattcctcttcattga 648  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981340 ccttaagatcca-ttttcgtttcatttctctttgagaaagtgtatatatatttgatctgaaagaatgatctgaatgaatatctgcattcctcttcattga 9981438  T
Q  649 caaaac 654  Q
    ||||||    
T  9981439 caaaac 9981444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 10035440 - 10035637
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035440 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 10035539  T
Q  119 caattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||    
T  10035540 caattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatcagctcatttcgtgaattgaag 10035637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 10360451 - 10360185
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaa--tcagctc----a 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  ||| |      |    
T  10360451 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaacctgtaactgctgcattaatctcaacaataaaa 10360352  T
Q  113 tttggtcaat--------tgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcactt 204  Q
     |||  ||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  10360351 attgaacaatcatgtctttggagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggccta----tgtggatgataatctgctcactt 10360256  T
Q  205 gatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 275  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  10360255 gatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcagcttccattgattgc 10360185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 395 - 525
Target Start/End: Original strand, 10130686 - 10130816
Alignment:
Q  395 gtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacatt 494  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130686 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacatt 10130785  T
Q  495 tgttgaattaacaattttgtttcttcaaaat 525  Q
    ||||||||||||| |||||||||||| ||||    
T  10130786 tgttgaattaacagttttgtttcttccaaat 10130816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 395 - 525
Target Start/End: Complemental strand, 10372329 - 10372199
Alignment:
Q  395 gtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacatt 494  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372329 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacatt 10372230  T
Q  495 tgttgaattaacaattttgtttcttcaaaat 525  Q
    ||||||||||||| |||||||||||| ||||    
T  10372229 tgttgaattaacagttttgtttcttccaaat 10372199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 663 - 760
Target Start/End: Original strand, 9994758 - 9994855
Alignment:
Q  663 tatatgtcatctttttaagtttcactgctaaggcctaaacttgtcttctgagatagttacctttgtcgtaaacaatgcctccaaaattcttacaacct 760  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9994758 tataagtcatctttttaagtttcactgctaaggcctaaacttgtcttctgagatagttacctttgtcgtaaacaatgcctccaaaattcttacaacct 9994855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 10130351 - 10130438
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130351 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 10130438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 10584308 - 10584395
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584308 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatc 10584395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 10584429 - 10584506
Alignment:
Q  126 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcact 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584429 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcact 10584506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 524 - 629
Target Start/End: Original strand, 10035698 - 10035804
Alignment:
Q  524 atcatatagttgatcctgattgagaccttaagatccatttttcgtttcatttctcttcaagaaagtg--tatatatatttgatctgaaagaatgatctga 621  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||||||    
T  10035698 atcatatagttgatcctggttgagaccttaagatcca-ttttcgtttcatttctcttcgagaaagtgtatatatatatttcatctgaaagaatgatctga 10035796  T
Q  622 atgaatat 629  Q
    ||||||||    
T  10035797 atgaatat 10035804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 280 - 443
Target Start/End: Original strand, 10264591 - 10264751
Alignment:
Q  280 ttgtattttattatcatttgaatgtttcctaatatcccgcatgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaacan 379  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||      
T  10264591 ttgtattttattatcatttgaatgtttcgtaataacctgcatgatccgatcagacaaagtacaatgtagtaggatttgtaatattcttaatttgtaactt 10264690  T
Q  380 nnnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccat 443  Q
                ||||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  10264691 tttttttcg---gacgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 10264751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 10130472 - 10130562
Alignment:
Q  126 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 216  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||| ||| ||||||||||    
T  10130472 agctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcccagctatgtggatgataattagctcatttggtgaattgaag 10130562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 10264427 - 10264530
Alignment:
Q  126 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctag---ctatgtggatgataatctgctcacttgatgaattgaagaaaact 222  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  | |    ||||||||||||||||| |||||||||||||||||||||||| |    
T  10264427 agctaatcaaaggaaaatgcttatttcatcttttcagaagatcaaagttcaaaggcctatgtggatgataatcagctcacttgatgaattgaagaaaaat 10264526  T
Q  223 gctt 226  Q
    ||||    
T  10264527 gctt 10264530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 10372462 - 10372397
Alignment:
Q  126 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgat 191  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  10372462 agctaatcaaaggaaaatgtttatttcatcttttcaggagatcaaaggcctagctatgtggatgat 10372397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 716
Target Start/End: Original strand, 10035899 - 10035952
Alignment:
Q  663 tatatgtcatctttttaagtttcactgctaaggcctaaacttgtcttctgagat 716  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  10035899 tataagtcatctttttaagtttcactgctaaggccaaaacttgtctactgagat 10035952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 10264132 - 10264193
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttgg 80  Q
    ||||||||| ||  ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  10264132 acataagtcttgttggaaaactggtttcttattaatttttgggcttataaaaccatctttgg 10264193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 10430367 - 10430267
Alignment:
Q  131 atcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttcttt 230  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||   ||| | |||||| |||| || |||| |||||||||||||||| ||||| |||    
T  10430367 atcaaaggaaaatgcttatttgatcttttcaggagatcaa--gcc---ctaagcggatgaaaatcagcccactcgatgaattgaagaaaaatgcttattt 10430273  T
Q  231 gatttt 236  Q
    ||||||    
T  10430272 gatttt 10430267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 10430160 - 10430097
Alignment:
Q  296 tttgaatgtttcctaatatcccgcatgatccggtcagacaaagtacaatgcagtagggtttgta 359  Q
    |||| ||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||||    
T  10430160 tttgtatgtttcataataacctgcatgatccggtcagacagattacaatgcagtagggtttgta 10430097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 11772695 - 11772752
Alignment:
Q  318 gcatgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgta 375  Q
    ||||||||| || |||||||||| |||||| |||| ||||||||||||||||||||||    
T  11772695 gcatgatcccgttagacaaagtagaatgcattaggatttgtaatattcttaatttgta 11772752  T

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Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 514 - 594
Target Start/End: Complemental strand, 11778327 - 11778244
Alignment:
Q  514 tttcttcaaaatcatatagttgatcctgattgagaccttaagatccattt---ttcgtttcatttctcttcaagaaagtgtata 594  Q
    ||||||||||||||||||||||| ||||  |  |||||||||||||| ||   ||| ||||||||| |||||||||||||||||    
T  11778327 tttcttcaaaatcatatagttgaacctggctctgaccttaagatccagtttaattcatttcatttcgcttcaagaaagtgtata 11778244  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 10134711 - 10134745
Alignment:
Q  342 aatgcagtagggtttgtaatattcttaatttgtaa 376  Q
    |||||||||||||||||||||||||||||||||||    
T  10134711 aatgcagtagggtttgtaatattcttaatttgtaa 10134745  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 10430591 - 10430545
Alignment:
Q  34 gaaaactggtttcttatttat-ttttgggcttataaaactatctttg 79  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  10430591 gaaaactggtttcttattaatattttgggcttataaaactatctttg 10430545  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 10093176 - 10093215
Alignment:
Q  328 gtcagacaaagtacaatgcagtagggtttgtaatattctt 367  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10093176 gtcatacagagtacaatgcagtagggtttgtaatattctt 10093215  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 10200058 - 10200097
Alignment:
Q  328 gtcagacaaagtacaatgcagtagggtttgtaatattctt 367  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10200058 gtcatacagagtacaatgcagtagggtttgtaatattctt 10200097  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 10130614 - 10130671
Alignment:
Q  320 atgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaac 377  Q
    |||||| ||||||||||| |||||||  |||||||||| ||||||  |||||||||||    
T  10130614 atgatctggtcagacaaaatacaatgttgtagggtttgcaatatttataatttgtaac 10130671  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 10130846 - 10130879
Alignment:
Q  342 aatgcagtagggtttgtaatattcttaatttgta 375  Q
    ||||| ||||||||||||||||||||||||||||    
T  10130846 aatgcggtagggtttgtaatattcttaatttgta 10130879  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 375
Target Start/End: Complemental strand, 10372169 - 10372136
Alignment:
Q  342 aatgcagtagggtttgtaatattcttaatttgta 375  Q
    ||||| ||||||||||||||||||||||||||||    
T  10372169 aatgcggtagggtttgtaatattcttaatttgta 10372136  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 10372401 - 10372344
Alignment:
Q  320 atgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaac 377  Q
    |||||| ||||||||||| |||||||  |||||||||| ||||||  |||||||||||    
T  10372401 atgatctggtcagacaaaatacaatgttgtagggtttgcaatatttataatttgtaac 10372344  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 10584614 - 10584643
Alignment:
Q  349 tagggtttgtaatattcttaatttgtaaca 378  Q
    ||||||||||||||||||||||||||||||    
T  10584614 tagggtttgtaatattcttaatttgtaaca 10584643  T

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Target: scaffold0083 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 54321 - 54065
Alignment:
Q  19 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54321 acataagtcatgccggaaaactggtttcttatttatttttgggcttataaaactatctttggaaaaagctgtaactgctacattaatcagctcatttggt 54222  T
Q  119 caattgaagctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54221 caattgaagctaatcaaaggaaaatgcttatttcatcttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaa 54122  T
Q  219 aactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 275  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  54121 aactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgc 54065  T

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Target: scaffold0083; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 349 - 654
Target Start/End: Complemental strand, 53996 - 53693
Alignment:
Q  349 tagggtttgtaatattcttaatttgtaacannnnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatt 448  Q
    ||||||||||||||||||||||||||||||           || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53996 tagggtttgtaatattcttaatttgtaacattttttgttt-gcaacgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcatt 53898  T
Q  449 tgttgaattaatattggttctaaatattcatattcctatatacatttgttgaattaacaattttgtttcttcaaaatcatatagttgatcctgattgaga 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53897 tgttgaattaatattggttctaaatattcatattcctatatacatttgttgaattaacaattttgtttcttcaaaatcatatagttgatcctggttgaga 53798  T
Q  549 ccttaagatccatttttcgtttcatttctcttcaagaaagtgtatatatatttgatctgaaagaatgatctgaatgaatatctgcattcctcttcattga 648  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53797 ccttaagatcca-ttttcgtttcatttctctttgagaaagtgtatatatatttgatctgaaagaatgatctgaatgaatatctgcattcctcttcattga 53699  T
Q  649 caaaac 654  Q
    ||||||    
T  53698 caaaac 53693  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 26910551 - 26910640
Alignment:
Q  126 agctaatcaaaggaaaatgcttatttcaacttttcaggagatcaaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaa 220  Q
    ||||||| |||| ||||||||||||| | ||||||||||||||||||      ||| || ||||| |||| ||||||||||||||| ||||||||    
T  26910551 agctaattaaagaaaaatgcttatttgatcttttcaggagatcaaag-----cctaagttgatgaaaatcagctcacttgatgaatcgaagaaaa 26910640  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 502
Target Start/End: Original strand, 11488900 - 11488933
Alignment:
Q  469 taaatattcatattcctatatacatttgttgaat 502  Q
    ||||||||| ||||||||||||||||||||||||    
T  11488900 taaatattcttattcctatatacatttgttgaat 11488933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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